Nathan A. Ahlgren - Publications, H-index & Citations

Nathan A. Ahlgren

Clark University

24H指数

54论文数

5.0K被引数

收录论文 21

发表时间

Urbanization impacts on stream and lake water quality in a small watershed in central Massachusetts, USA 美国马萨诸塞州中部小流域城市化对河流和湖泊水质的影响

Environmental Monitoring and Assessment

IF3

2026-04-27

PREAI

Laura C. Reynolds; Allison L. Dunn; William J. Hansen; Meghna Dilip; Diana M. T. Sharpe; Nathan A. Ahlgren; Jacquelyn Burmeister; Caitlin Dellert; Alyssa Hammond; Stephen Humphrey; Katie Liming; Emily Maynard; Kari Smith-Mickunas; Nicholas Pagan; Zachary Trudell

A Beginner's Guide to Using DeepVirFinder for Viral Sequence Identification From Metagenomic Datasets 基于宏基因组数据集的病毒序列鉴定：DeepVirFinder使用入门指南

Current Protocols

IF2.2

2026-01-29

PREAI

Mo, Yuqian; Ahlgren, Nathan; Fuhrman, Jed A.; Sun, Fengzhu; Hou, Shengwei

New tRNA-targeting transposons that hijack phage and vesicles

TRENDS IN GENETICS

IF16.3

2023-06-01

PREAI

Dart, Emily; Ahlgren, Nathan A.

Diverse Marine T4-like Cyanophage Communities Are Primarily Comprised of Low-Abundance Species Including Species with Distinct Seasonal, Persistent, Occasional, or Sporadic Dynamics 多样化的海洋T4-like噬藻群落主要由低丰度物种组成，包括具有明显季节性，持久性，偶发或零星动态的物种

VIRUSES-BASEL

IF3.5

2023-02-20

OAAI

Dart, Emily; Fuhrman, Jed A. A.; Ahlgren, Nathan A. A.

Niche partitioning of low-light adapted Prochlorococcus subecotypes across oceanographic gradients of the North Pacific Subtropical Front

LIMNOLOGY AND OCEANOGRAPHY

IF3.7

2021-01-28

OAAI

Thompson, Anne W.; Kouba, Kathleen; Ahlgren, Nathan A.

A network-based integrated framework for predicting virus-prokaryote interactions

genomics proteomics bioinformatics

IF2.8

2020-06-23

OAAI

Wang, Weili; Ren, Jie; Tang, Kujin; Dart, Emily; Ignacio-Espinoza, Julio Cesar; Fuhrman, Jed A.; Braun, Jonathan; Sun, Fengzhu; Ahlgren, Nathan A.

Genomic mosaicism underlies the adaptation of marine Synechococcus ecotypes to distinct oceanic iron niches 基因组镶嵌是海洋聚球藻生态型适应不同海洋铁生态链的基础

ENVIRONMENTAL MICROBIOLOGY

IF4

2019-12-27

PREAI

Ahlgren, Nathan A.; Belisle, Bernard Shafer; Lee, Michael D.

Multi-year dynamics of fine-scale marine cyanobacterial populations are more strongly explained by phage interactions than abiotic, bottom-up factors 噬菌体相互作用比非生物，自下而上的因素更能解释精细海洋蓝细菌种群的多年动态

ENVIRONMENTAL MICROBIOLOGY

IF4

2019-06-18

OAAI

Ahlgren, Nathan A.; Perelman, Jessica N.; Yeh, Yi-Chun; Fuhrman, Jed A.

Marine Synechococcus isolates representing globally abundant genomic lineages demonstrate a unique evolutionary path of genome reduction without a decrease in GC content

ENVIRONMENTAL MICROBIOLOGY

IF4

2019-03-12

PREAI

Lee, Michael D.; Ahlgren, Nathan A.; Kling, Joshua D.; Walworth, Nathan G.; Rocap, Gabrielle; Saito, Mak A.; Hutchins, David A.; Webb, Eric A.

Discovery of several novel, widespread, and ecologically distinct marine Thaumarchaeota viruses that encode amoC nitrification genes

ISME JOURNAL

IF10

2018-10-12

OAAI

Ahlgren, Nathan A.; Fuchsman, Clara A.; Rocap, Gabrielle; Fuhrman, Jed A.

VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data VirFinder: 一种基于k-mer的新型工具，用于从组装的宏基因组数据中识别病毒序列

MICROBIOME

IF12.7

2017-07-06

412

OAAI

Ren, Jie; Ahlgren, Nathan A.; Lu, Yang Young; Fuhrman, Jed A.; Sun, Fengzhu

Genome and epigenome of a novel marine Thaumarchaeota strain suggest viral infection, phosphorothioation DNA modification and multiple restriction systems

ENVIRONMENTAL MICROBIOLOGY

IF4

2017-05-26

PREAI

Ahlgren, Nathan A.; Chen, Yangyang; Needham, David M.; Parada, Alma E.; Sachdeva, Rohan; Trinh, Vickie; Chen, Ting; Fuhrman, Jed A.

Alignment-free d2* oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences

NUCLEIC ACIDS RESEARCH

IF13.1

2016-11-28

202

OAAI

Ahlgren, Nathan A.; Ren, Jie; Lu, Yang Young; Fuhrman, Jed A.; Sun, Fengzhu

Co-occurring Synechococcus ecotypes occupy four major oceanic regimes defined by temperature, macronutrients and iron

ISME JOURNAL

IF10

2015-07-24

177

OAAI

Sohm, Jill A.; Ahlgren, Nathan A.; Thomson, Zachary J.; Williams, Cheryl; Moffett, James W.; Saito, Mak A.; Webb, Eric A.; Rocap, Gabrielle

The unique trace metal and mixed layer conditions of the Costa Rica upwelling dome support a distinct and dense community of Synechococcus

LIMNOLOGY AND OCEANOGRAPHY

IF3.7

2014-10-12

PREAI

Ahlgren, Nathan A.; Noble, Abigail; Patton, Allison P.; Roache-Johnson, Kathryn; Jackson, Laurel; Robinson, Daniela; McKay, Cedar; Moore, Lisa R.; Saito, Mak A.; Rocap, Gabrielle

Diversity and distribution of marine Synechococcus: multiple gene phylogenies for consensus classification and development of qPCR assays for sensitive measurement of clades in the ocean

FRONTIERS IN MICROBIOLOGY

IF4.5

2012-01-01

140

OAAI

Ahlgren, Nathan A.; Rocap, Gabrielle

Aryl-homoserine lactone quorum sensing in stem-nodulating photosynthetic bradyrhizobia

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2011-04-06

OAAI