Irina O. Vvedenskaya - Publications, H-index & Citations

Irina O. Vvedenskaya

university of pittsburgh

19H指数

44论文数

1.6K被引数

收录论文 21

发表时间

Important role in transcription start site selection for the RNA polymerase II-TFIIE-TFIIH interface in Saccharomyces cerevisiae RNA聚合酶II-TFIIE-TFIIH界面在酿酒酵母转录起始位点选择中的重要作用

Genetics

IF5.1

2026-02-01

PREAI

Basnet, Pratik; Zhu, Yunye; Vvedenskaya, Irina O.; Arora, Payal; Hammer, Staci E.; Mcvicar, Brittany R.; Alex, Shawn Aji; Nickels, Bryce E.; Kaplan, Craig D.

Quantitative analysis of transcription start site selection reveals control by DNA sequence, RNA polymerase II activity and NTP levels 转录起始位点选择的定量分析揭示了DNA序列，RNA聚合酶II活性和NTP水平的控制

NATURE STRUCTURAL & MOLECULAR BIOLOGY

IF10.1

2024-01-04

OAAI

Zhu, Yunye; Vvedenskaya, Irina O.; Sze, Sing-Hoi; Nickels, Bryce E.; Kaplan, Craig D.

Ssl2/TFIIH function in transcription start site scanning by RNA polymerase II in Saccharomyces cerevisiae 酿酒酵母中RNA聚合酶II在转录起始位点扫描中的Ssl2/TFIIH功能

ELIFE

IF0

2021-10-15

OAAI

Zhao, Tingting; Vvedenskaya, Irina O.; Lai, William K. M.; Basu, Shrabani; Pugh, B. Franklin; Nickels, Bryce E.; Kaplan, Craig D.

Promoter-sequence determinants and structural basis of primer-dependent transcription initiation in Escherichia coli

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2021-06-29

OAAI

Skalenko, Kyle S.; Li, Lingting; Zhang, Yuanchao; Vvedenskaya, Irina O.; Winkelman, Jared T.; Cope, Alexander L.; Taylor, Deanne M.; Shah, Premal; Ebright, Richard H.; Kinney, Justin B.; Zhang, Yu; Nickels, Bryce E.

XACT-Seq Comprehensively Defines the Promoter-Position and Promoter-Sequence Determinants for Initial-Transcription Pausing

MOLECULAR CELL

IF16.6

2020-09-01

OAAI

Winkelman, Jared T.; Pukhrambam, Chirangini; Vvedenskaya, Irina O.; Zhang, Yuanchao; Taylor, Deanne M.; Shah, Premal; Ebright, Richard H.; Nickels, Bryce E.

Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae

GENOME BIOLOGY

IF9.4

2020-06-02

OAAI

Qiu, Chenxi; Jin, Huiyan; Vvedenskaya, Irina; Llenas, Jordi Abante; Zhao, Tingting; Malik, Indranil; Visbisky, Alex M.; Schwartz, Scott L.; Cui, Ping; Cabart, Pavel; Han, Kang Hoo; Lai, William K. M.; Metz, Richard P.; Johnson, Charles D.; Sze, Sing-Hoi; Pugh, B. Franklin; Nickels, Bryce E.; Kaplan, Craig D.

Detection of spacer precursors formed in vivo during primed CRISPR adaptation

NATURE COMMUNICATIONS

IF15.7

2019-10-10

OAAI

Shiriaeva, Anna A.; Savitskaya, Ekaterina; Datsenko, Kirill A.; Vvedenskaya, Irina O.; Fedorova, Iana; Morozova, Natalia; Metlitskaya, Anastasia; Sabantsev, Anton; Nickels, Bryce E.; Severinov, Konstantin; Semenova, Ekaterina

Toxin-mediated ribosome stalling reprograms the Mycobacterium tuberculosis proteome

NATURE COMMUNICATIONS

IF15.7

2019-07-10

OAAI

Barth, Valdir C.; Zeng, Ju-Mei; Vvedenskaya, Irina O.; Ouyang, Ming; Husson, Robert N.; Woychik, Nancy A.

CapZyme-Seq Comprehensively Defines Promoter-Sequence Determinants for RNA 5′ Capping with NAD+

MOLECULAR CELL

IF16.6

2018-05-01

OAAI

Vvedenskaya, Irina O.; Bird, Jeremy G.; Zhang, Yuanchao; Zhang, Yu; Jiao, Xinfu; Barvik, Ivan; Krasny, Libor; Kiledjian, Megerditch; Taylor, Deanne M.; Ebright, Richard H.; Nickels, Bryce E.

Interactions between RNA polymerase and the core recognition element are a determinant of transcription start site selection RNA聚合酶和核心识别元件之间的相互作用是转录起始位点选择的决定因素

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2016-05-09

OAAI

Vvedenskaya, Irina O.; Vahedian-Movahed, Hanif; Zhang, Yuanchao; Taylor, Deanne M.; Ebright, Richard H.; Nickels, Bryce E.

tRNA is a new target for cleavage by a MazF toxin

NUCLEIC ACIDS RESEARCH

IF13.1

2016-01-05

OAAI

Schifano, Jason M.; Cruz, Jonathan W.; Vvedenskaya, Irina O.; Edifor, Regina; Ouyang, Ming; Husson, Robert N.; Nickels, Bryce E.; Woychik, Nancy A.

Massively Systematic Transcript End Readout, MASTER'': Transcription Start Site Selection, Transcriptional Slippage, and Transcript Yields

MOLECULAR CELL

IF16.6

2015-12-01

OAAI

Vvedenskaya, Irina O.; Zhang, Yuanchao; Goldman, Seth R.; Valenti, Anna; Visone, Valeria; Taylor, Deanne M.; Ebright, Richard H.; Nickels, Bryce E.

Growth-regulating Mycobacterium tuberculosis VapC-mt4 toxin is an isoacceptor-specific tRNase

NATURE COMMUNICATIONS

IF15.7

2015-07-09

OAAI

Cruz, Jonathan W.; Sharp, Jared D.; Hoffer, Eric D.; Maehigashi, Tatsuya; Vvedenskaya, Irina O.; Konkimalla, Arvind; Husson, Robert N.; Nickels, Bryce E.; Dunham, Christine M.; Woychik, Nancy A.

Ubiquitous Promoter-Localization of Essential Virulence Regulators in Francisella tularensis

PLOS PATHOGENS

IF4.9

2015-04-01

OAAI

Ramsey, Kathryn M.; Osborne, Melisa L.; Vvedenskaya, Irina O.; Su, Cathy; Nickels, Bryce E.; Dove, Simon L.

Sequence-Specific RNAP-DNA Interactions in Transcription Initiation and Elongation: Core Recognition Element (CRE)

BIOPHYSICAL JOURNAL

IF3.1

2015-01-01

OAAI

Vahedian-Movahed, Hanif; Zhang, Yu; Bird, Jeremy; Vvedenskaya, Irina; Knobloch, Jared; Goldman, Seth; Nickels, Bryce; Ebright, Richard H.

An RNA-seq method for defining endoribonuclease cleavage specificity identifies dual rRNA substrates for toxin MazF-mt3

NATURE COMMUNICATIONS

IF15.7

2014-04-08

OAAI

Schifano, Jason M.; Vvedenskaya, Irina O.; Knoblauch, Jared G.; Ouyang, Ming; Nickels, Bryce E.; Woychik, Nancy A.

NanoRNAs Prime Transcription Initiation In Vivo

MOLECULAR CELL

IF16.6

2011-06-01

120

OAAI

Goldman, Seth R.; Sharp, Josh S.; Vvedenskaya, Irina O.; Livny, Jonathan; Dove, Simon L.; Nickels, Bryce E.

Rapid isolation and identification of bacteriophage T4-encoded modifications of Escherichia coli RNA polymerase:: A generic method to study bacteriophage/host interactions

JOURNAL OF PROTEOME RESEARCH

IF3.6

2008-02-14

OAAI

Westblade, Lars F.; Minakhin, Leonid; Kuznedelov, Konstandin; Tackett, Alan J.; Chang, Emmanuel J.; Mooney, Rachel A.; Vvedenskaya, Irina; Wang, Qing Jun; Fenyoe, David; Rout, Michael P.; Landick, Robert; Chait, Brian T.; Severinov, Konstantin; Darst, Seth A.

A basal promoter element recognized by free RNA polymerase σ subunit determines promoter recognition by RNA polymerase holoenzyme

MOLECULAR CELL

IF16.6

2006-07-01

OAAI

Feklistov, Andrey; Barinova, Nataliya; Sevostyanova, Anastasiya; Heyduk, Ewa; Bass, Irina; Vvedenskaya, Irina; Kuznedelov, Konstantin; Merkiene, Egle; Stavrovskaya, Elena; Klimasauskas, Saulius; Nikiforov, Vadim; Heyduk, Tomasz; Severinov, Konstantin; Kulbachinskiy, Andrey

Flavonoid composition over fruit development and maturation in American cranberry, Vaccinium macrocarpon Ait.

PLANT SCIENCE

IF4.1

2004-11-01

118

PREAI

Vvedenskaya, IO; Vorsa, N

研究方向