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Defining super-enhancers by highly ranked histone H4 multi-acetylation levels identifies transcription factors associated with glioblastoma stem-like properties 通过高度分级的组蛋白H4多乙酰化水平定义超级增强子鉴定与胶质母细胞瘤干细胞特性相关的转录因子 Das, Nando D.; Chang, Jen-Chien; Hon, Chung-Chau; Kelly, S. Thomas; Ito, Shinsuke; Lizio, Marina; Kaczkowski, Bogumil; Watanabe, Hisami; Katsushima, Keisuke; Natsume, Atsushi; Koseki, Haruhiko; Kondo, Yutaka; Minoda, Aki; Umehara, Takashi 分享 收藏
Inducing human retinal pigment epithelium-like cells from somatic tissue Woogeng, Ivo Ngundu; Kaczkowski, Bogumil; Abugessaisa, Imad; Hu, Haiming; Tachibana, Akihiro; Sahara, Yoshiki; Hon, Chung-Chau; Hasegawa, Akira; Sakai, Noriko; Nishida, Mitsuhiro; Sanyal, Hashimita; Sho, Junki; Kajita, Keisuke; Kasukawa, Takeya; Takasato, Minoru; Carninci, Piero; Maeda, Akiko; Mandai, Michiko; Arner, Erik; Takahashi, Masayo; Kime, Cody 分享 收藏
Development of p53 knockout U87MG cell line for unbiased drug delivery testing system using CRISPR-Cas9 and transcriptomic analysis Kwon, Andrew Tae-Jun; Mohri, Kohta; Takizawa, Satoshi; Arakawa, Takahiro; Takahashi, Maiko; Kaczkowski, Bogumil; Furuno, Masaaki; Suzuki, Harukazu; Tagami, Shunsuke; Mukai, Hidefumi; Arner, Erik 分享 收藏
Functional annotation of human long noncoding RNAs via molecular phenotyping (vol 30, pg 1060, 2020) Ramilowski, Jordan A.; Yip, Chi Wai; Agrawal, Saumya; Chang, Jen-Chien; Ciani, Yari; Kulakovskiy, Ivan V.; Mendez, Mickael; Ooi, Jasmine Li Ching; Ouyang, John F.; Parkinson, Nick; Petri, Andreas; Roos, Leonie; Severin, Jessica; Yasuzawa, Kayoko; Abugessaisa, Imad; Akalin, Altuna; Antonov, Ivan V.; Arner, Erik; Bonetti, Alessandro; Bono, Hidemasa; Borsari, Beatrice; Brombacher, Frank; Cameron, Christopher J. F.; Cannistraci, Carlo Vittorio; Cardenas, Ryan; Cardon, Melissa; Chang, Howard; Dostie, Josee; Ducoli, Luca; Favorov, Alexander; Fort, Alexandre; Garrido, Diego; Gil, Noa; Gimenez, Juliette; Guler, Reto; Handoko, Lusy; Harshbarger, Jayson; Hasegawa, Akira; Hasegawa, Yuki; Hashimoto, Kosuke; Hayatsu, Norihito; Heutink, Peter; Hirose, Tetsuro; Imada, Eddie L.; Itoh, Masayoshi; Kaczkowski, Bogumil; Kanhere, Aditi; Kawabata, Emily; Kawaji, Hideya; Kawashima, Tsugumi; Kelly, S. Thomas; Kojima, Miki; Kondo, Naoto; Koseki, Haruhiko; Kouno, Tsukasa; Kratz, Anton; Kurowska-Stolarska, Mariola; Kwon, Andrew Tae Jun; Leek, Jeffrey; Lennartsson, Andreas; Lizio, Marina; Lopez-Redondo, Fernando; Luginbuhl, Joachim; Maeda, Shiori; Makeev, Vsevolod J.; Marchionni, Luigi; Medvedeva, Yulia A.; Minoda, Aki; Muller, Ferenc; Munoz-Aguirre, Manuel; Murata, Mitsuyoshi; Nishiyori, Hiromi; Nitta, Kazuhiro R.; Noguchi, Shuhei; Noro, Yukihiko; Nurtdinov, Ramil; Okazaki, Yasushi; Orlando, Valerio; Paquette, Denis; Parr, Callum J. C.; Rackham, Owen J. L.; Rizzu, Patrizia; Martinez, Diego Fernando Sanchez; Sandelin, Albin; Sanjana, Pillay; Semple, Colin A. M.; Shibayama, Youtaro; Sivaraman, Divya M.; Suzuki, Takahiro; Szumowski, Suzannah C.; Tagami, Michihira; Taylor, Martin S.; Terao, Chikashi; Thodberg, Malte; Thongjuea, Supat; Tripathi, Vidisha; Ulitsky, Igor; Verardo, Roberto; Vorontsov, Ilya E.; Yamamoto, Chinatsu; Young, Robert S.; Baillie, J. Kenneth; Forrest, Alistair R. R.; Guigo, Roderic; Hoffman, Michael M.; Hon, Chung Chau; Kasukawa, Takeya; Kauppinen, Sakari; Kere, Juha; Lenhard, Boris; Schneider, Claudio; Suzuki, Harukazu; Yagi, Ken; de Hoon, Michiel J. L.; Shin, Jay W.; Carninci, Piero 分享 收藏
Functional annotation of human long noncoding RNAs via molecular phenotyping Ramilowski, Jordan A.; Yip, Chi Wai; Agrawal, Saumya; Chang, Jen-Chien; Ciani, Yari; Kulakovskiy, Ivan V.; Mendez, Mickael; Ooi, Jasmine Li Ching; Ouyang, John F.; Parkinson, Nick; Petri, Andreas; Roos, Leonie; Severin, Jessica; Yasuzawa, Kayoko; Abugessaisa, Imad; Akalin, Altuna; Antonov, Ivan V.; Arner, Erik; Bonetti, Alessandro; Bono, Hidemasa; Borsari, Beatrice; Brombacher, Frank; Cameron, Chris J. F.; Cannistraci, Carlo Vittorio; Cardenas, Ryan; Cardon, Melissa; Chang, Howard; Dostie, Josee; Ducoli, Luca; Favorov, Alexander; Fort, Alexandre; Garrido, Diego; Gil, Noa; Gimenez, Juliette; Guler, Reto; Handoko, Lusy; Harshbarger, Jayson; Hasegawa, Akira; Hasegawa, Yuki; Hashimoto, Kosuke; Hayatsu, Norihito; Heutink, Peter; Hirose, Tetsuro; Imada, Eddie L.; Itoh, Masayoshi; Kaczkowski, Bogumil; Kanhere, Aditi; Kawabata, Emily; Kawaji, Hideya; Kawashima, Tsugumi; Kelly, S. Thomas; Kojima, Miki; Kondo, Naoto; Koseki, Haruhiko; Kouno, Tsukasa; Kratz, Anton; Kurowska-Stolarska, Mariola; Kwon, Andrew Tae Jun; Leek, Jeffrey; Lennartsson, Andreas; Lizio, Marina; Lopez-Redondo, Fernando; Luginbuhl, Joachim; Maeda, Shiori; Makeev, Vsevolod J.; Marchionni, Luigi; Medvedeva, Yulia A.; Minoda, Aki; Mueller, Ferenc; Munoz-Aguirre, Manuel; Murata, Mitsuyoshi; Nishiyori, Hiromi; Nitta, Kazuhiro R.; Noguchi, Shuhei; Noro, Yukihiko; Nurtdinov, Ramil; Okazaki, Yasushi; Orlando, Valerio; Paquette, Denis; Parr, Callum J. C.; Rackham, Owen J. L.; Rizzu, Patrizia; Martinez, Diego Fernando Sanchez; Sandelin, Albin; Sanjana, Pillay; Semple, Colin A. M.; Shibayama, Youtaro; Sivaraman, Divya M.; Suzuki, Takahiro; Szumowski, Suzannah C.; Tagami, Michihira; Taylor, Martin S.; Terao, Chikashi; Thodberg, Malte; Thongjuea, Supat; Tripathi, Vidisha; Ulitsky, Igor; Verardo, Roberto; Vorontsov, Ilya E.; Yamamoto, Chinatsu; Young, Robert S.; Baillie, J. Kenneth; Forrest, Alistair R. R.; Guigo, Roderic; Hoffman, Michael M.; Hon, Chung Chau; Kasukawa, Takeya; Kauppinen, Sakari; Kere, Juha; Lenhard, Boris; Schneider, Claudio; Suzuki, Harukazu; Yagi, Ken; de Hoon, Michiel J. L.; Shin, Jay W.; Carninci, Piero 分享 收藏
Transcriptional landscape of Mycobacterium tuberculosis infection in macrophages Roy, Sugata; Schmeier, Sebastian; Kaczkowski, Bogumil; Arner, Erik; Alam, Tanvir; Ozturk, Mumin; Tamgue, Ousman; Parihar, Suraj P.; Kawaji, Hideya; Itoh, Masayoshi; Lassmann, Timo; Carninci, Piero; Hayashizaki, Yoshihide; Forrest, Alistair R. R.; Guler, Reto; Bajic, Vladimir B.; Brombacher, Frank; Suzuki, Harukazu 分享 收藏
Integrative CAGE and DNA Methylation Profiling Identify Epigenetically Regulated Genes in NSCLC Horie, Masafumi; Kaczkowski, Bogumil; Ohshima, Mitsuhiro; Matsuzaki, Hirotaka; Noguchi, Satoshi; Mikami, Yu; Lizio, Marina; Itoh, Masayoshi; Kawaji, Hideya; Lassmann, Timo; Carninci, Piero; Hayashizaki, Yoshihide; Forrest, Alistair R. R.; Takai, Daiya; Yamaguchi, Yoko; Micke, Patrick; Saito, Akira; Nagase, Takahide 分享 收藏
Recurrent transcriptome alterations across multiple cancer types Kaczkowski, Bogumil; Tanaka, Yuji; Kawaji, Hideya; Sandelin, Albin; Andersson, Robin; Itot, Masayoshi; Lassmann, Timo; Hayashizaki, Yoshihide; Carninci, Piero; Forrest, Alistair R. R. 分享 收藏
Transcriptome Analysis of Recurrently Deregulated Genes across Multiple Cancers Identifies New Pan-Cancer Biomarkers Kaczkowski, Bogumil; Tanaka, Yuji; Kawaji, Hideya; Sandelin, Albin; Andersson, Robin; Itoh, Masayoshi; Lassmann, Timo; Hayashizaki, Yoshihide; Carninci, Piero; Forrest, Alistair R. R. 分享 收藏
CAGE profiling of ncRNAs in hepatocellular carcinoma reveals widespread activation of retroviral LTR promoters in virus-induced tumors Hashimoto, Kosuke; Suzuki, Ana Maria; Dos Santos, Alexandre; Desterke, Christophe; Collino, Agnese; Ghisletti, Serena; Braun, Emilie; Bonetti, Alessandro; Fort, Alexandre; Qin, Xian-Yang; Radaelli, Enrico; Kaczkowski, Bogumil; Forrest, Alistair R. R.; Kojima, Soichi; Samue, Didier; Natoli, Gioacchino; Buendia, Marie Annick; Faivre, Jamila; Carninci, Piero 分享 收藏
Batf2/Irf1 Induces Inflammatory Responses in Classically Activated Macrophages, Lipopolysaccharides, and Mycobacterial Infection Roy, Sugata; Guler, Reto; Parihar, Suraj P.; Schmeier, Sebastian; Kaczkowski, Bogumil; Nishimura, Hajime; Shin, Jay W.; Negishi, Yutaka; Ozturk, Mumin; Hurdayal, Ramona; Kubosaki, Atsutaka; Kimura, Yasumasa; de Hoon, Michiel J. L.; Hayashizaki, Yoshihide; Brombacher, Frank; Suzuki, Harukazu 分享 收藏
Cancers of unknown primary origin (CUP) are characterized by chromosomal instability (CIN) compared to metastasis of know origin 与已知来源的转移相比，未知原发来源的癌症 (CUP) 的特征在于染色体不稳定性 (CIN) Vikesa, Jonas; Moller, Anne Kirstine H.; Kaczkowski, Bogumil; Borup, Rehannah; Winther, Ole; Henao, Ricardo; Krogh, Anders; Perell, Katharina; Jensen, Flemming; Daugaard, Gedske; Nielsen, Finn C. 分享 收藏
MicroRNA expression analysis and Multiplex ligation-dependent probe amplification in metastatic and non-metastatic uveal melanoma Larsen, Ann-Cathrine; Holst, Line; Kaczkowski, Bogumil; Andersen, Morten T.; Manfe, Valentina; Siersma, Volkert D.; Kolko, Miriam; Kiilgaard, Jens F.; Winther, Ole; Prause, Jan U.; Gniadecki, Robert; Heegaard, Steffen 分享 收藏
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The Rectal Cancer microRNAome - microRNA Expression in Rectal Cancer and Matched Normal Mucosa Gaedcke, Jochen; Grade, Marian; Camps, Jordi; Sokilde, Rolf; Kaczkowski, Bogumil; Schetter, Aaron J.; Difilippantonio, Michael J.; Harris, Curtis C.; Ghadimi, B. Michael; Moller, Soren; Beissbarth, Tim; Ried, Thomas; Litman, Thomas 分享 收藏
Integrative analyses reveal novel strategies in HPV11,-16 and-45 early infection Kaczkowski, Bogumil; Rossing, Maria; Andersen, Ditte K.; Dreher, Anita; Morevati, Marya; Visser, Melissa A.; Winther, Ole; Nielsen, Finn Cilius; Norrild, Bodil 分享 收藏
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