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D

Dima Kozakov

University of Texas at Austin
H指数:56
被引数:1.5万

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Modeling Protein–Protein and Protein–Ligand Interactions by the ClusPro Team in CASP16

在CASP16中，ClusPro团队对蛋白质-蛋白质和蛋白质-配体相互作用进行建模

Proteins: Structure, Function, and Bioinformatics
IF0
2025-10-200
OAAI
Ryota Ashizawa; Sergei Kotelnikov; Omeir Khan; Stan Xiaogang Li; Ernest Glukhov; Xin Cao; Maria Lazou; Ayse Bekar-Cesaretli; Derara Hailegeorgis; Veranika Averkava; Yimin Zhu; George Jones; Hao Yu; Dmytro Kalitin; Darya Stepanenko; Kushal Koirala; Taras Patsahan; Dmitri Beglov; Mark Lukin; Diane Joseph-McCarthy; Carlos Simmerling; Alexander Tropsha; Evangelos Coutsias; Ken A. Dill; Dzmitry Padhorny; Sandor Vajda; Dima Kozakov
Conventional and non-conventional antigen-binding sites promote the development and function of chronic lymphocytic leukemia stereotyped subset #4 clones

常规和非常规抗原结合位点促进慢性淋巴细胞白血病定型亚群#4克隆的发展和功能

Frontiers in Immunology
IF5.9
2025-08-210
OA
Yun Liu; Dzmitry Padhorny‡; Rosa Catera; Antonella Nicolo‡; Xiao-Jie Yan; Stan Xiaogang Li‡; Anastasia Iatrou‡; Andrea N. Mazzarello‡; Noemi Destefani‡; Steven L. Allen‡; Jonathan E. Kolitz; Kanti R. Rai; Massimo Degano‡; Paolo P. Ghia; Charles C. Chu†‡; Florian Krammer‡; Hassan Jumaa‡; Kostas Stamatopoulos‡; Dima Kozakov; Nicholas Chiorazzi‡
Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment

AlphaFold对蛋白质复合物结构预测影响的CASP15-CAPRI实验

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
IF2.8
2023-10-3133
OA
Lensink, Marc F.; Brysbaert, Guillaume; Raouraoua, Nessim; Bates, Paul A.; Giulini, Marco; Honorato, Rodrigo V.; van Noort, Charlotte; Teixeira, Joao M. C.; Bonvin, Alexandre M. J. J.; Kong, Ren; Shi, Hang; Lu, Xufeng; Chang, Shan; Liu, Jian; Guo, Zhiye; Chen, Xiao; Morehead, Alex; Roy, Raj S.; Wu, Tianqi; Giri, Nabin; Quadir, Farhan; Chen, Chen; Cheng, Jianlin; Del Carpio, Carlos A.; Ichiishi, Eichiro; Rodriguez-Lumbreras, Luis A.; Fernandez-Recio, Juan; Harmalkar, Ameya; Chu, Lee-Shin; Canner, Sam; Smanta, Rituparna; Gray, Jeffrey J.; Li, Hao; Lin, Peicong; He, Jiahua; Tao, Huanyu; Huang, Sheng-You; Roel-Touris, Jorge; Jimenez-Garcia, Brian; Christoffer, Charles W.; Jain, Anika J.; Kagaya, Yuki; Kannan, Harini; Nakamura, Tsukasa; Terashi, Genki; Verburgt, Jacob C.; Zhang, Yuanyuan; Zhang, Zicong; Fujuta, Hayato; Sekijima, Masakazu; Kihara, Daisuke; Khan, Omeir; Kotelnikov, Sergei; Ghani, Usman; Padhorny, Dzmitry; Beglov, Dmitri; Vajda, Sandor; Kozakov, Dima; Negi, Surendra S.; Ricciardelli, Tiziana; Barradas-Bautista, Didier; Cao, Zhen; Chawla, Mohit; Cavallo, Luigi; Oliva, Romina; Yin, Rui; Cheung, Melyssa; Guest, Johnathan D.; Lee, Jessica; Pierce, Brian G.; Shor, Ben; Cohen, Tomer; Halfon, Matan; Schneidman-Duhovny, Dina; Zhu, Shaowen; Yin, Rujie; Sun, Yuanfei; Shen, Yang; Maszota-Zieleniak, Martyna; Bojarski, Krzysztof K.; Lubecka, Emilia A.; Marcisz, Mateusz; Danielsson, Annemarie; Dziadek, Lukasz; Gaardlos, Margrethe; Gieldon, Artur; Liwo, Adam; Samsonov, Sergey A.; Slusarz, Rafal; Zieba, Karolina; Sieradzan, Adam K.; Czaplewski, Cezary; Kobayashi, Shinpei; Miyakawa, Yuta; Kiyota, Yasuomi; Takeda-Shitaka, Mayuko; Olechnovic, Kliment; Valancauskas, Lukas; Dapkunas, Justas; Venclovas, Ceslovas; Wallner, Bjorn; Yang, Lin; Hou, Chengyu; He, Xiaodong; Guo, Shuai; Jiang, Shenda; Ma, Xiaoliang; Duan, Rui; Qui, Liming; Xu, Xianjin; Zou, Xiaoqin; Velankar, Sameer; Wodak, Shoshana J.
Parallelized multidimensional analytic framework applied to mammary epithelial cells uncovers regulatory principles in EMT
NATURE COMMUNICATIONS
IF15.7
2023-02-088
OAAI
Paul, Indranil; Bolzan, Dante; Youssef, Ahmed; Gagnon, Keith A.; Hook, Heather; Karemore, Gopal; Oliphant, Michael U. J.; Lin, Weiwei; Liu, Qian; Phanse, Sadhna; White, Carl; Padhorny, Dzmitry; Kotelnikov, Sergei; Chen, Christopher S.; Hu, Pingzhao; Denis, Gerald V.; Kozakov, Dima; Raught, Brian; Siggers, Trevor; Wuchty, Stefan; Muthuswamy, Senthil K.; Emili, Andrew
Protein folds vs. protein folding: Differing questions, different challenges
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
2022-12-2951
OAAI
Chen, Shi-Jie; Hassan, Mubashir; Jernigan, Robert L.; Jia, Kejue; Kihara, Daisuke; Kloczkowski, Andrzej; Kotelnikov, Sergei; Kozakov, Dima; Liang, Jie; Liwo, Adam; Matysiak, Silvina; Meller, Jarek; Micheletti, Cristian; Mitchell, Julie C.; Mondal, Sayantan; Nussinov, Ruth; Okazaki, Kei-ichi; Padhorny, Dzmitry; Skolnick, Jeffrey; Sosnick, Tobin R.; Stan, George; Vakser, Ilya; Zou, Xiaoqin; Rose, George D.

研究方向

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S
Sándor Vajda
H 指数:70论文数:312被引数:2.3万
D
Dmitri Beglov
H 指数:35论文数:109被引数:1.0万
D
Dzmitry Padhorny
H 指数:17论文数:43被引数:4,819
S
Sergei Kotelnikov
H 指数:15论文数:38被引数:860
D
David R. Hall
H 指数:41论文数:235被引数:1.3万
A
Adrian Whitty
H 指数:43论文数:113被引数:8,894
R
Ryan Brenke
H 指数:12论文数:27被引数:2,479
I
Ioannis Ch. Paschalidis
H 指数:41论文数:407被引数:6,617
M
Mikhail Ignatov
H 指数:12论文数:22被引数:574
沈洋 封面图
沈洋
H 指数:41论文数:229被引数:1.0万