Jifan Shi - Publications, H-index & Citations

史

史际帆 (Jifan Shi)

fudan university

12H指数

33论文数

344被引数

收录论文 14

发表时间

Integrative cross-sample alignment and spatially differential gene analysis for spatial transcriptomics 整合跨样本比对和空间差异基因分析用于空间转录组学

Nature Communications

IF15.7

2026-06-25

OAAI

Yecheng Tan; Zezhou Wang; Ai Wang; Yan Yan; Wei Lin; Qing Nie; Jifan Shi

Deciphering interventional dynamical causality from non-intervention complex systems 解析非干预复杂系统中的干预动力学因果关系

the innovation

IF0

2026-03-30

OAAI

Jifan Shi; Yang Li; Juan Zhao; Siyang Leng; Rui Bao; Kazuyuki Aihara; Luonan Chen; Wei Lin

Dynamical Causality Under Latent Confounders for Biological Network Reconstruction 隐性混杂因素下的生物网络重建动力学因果性

IEEE Transactions on Pattern Analysis and Machine Intelligence

IF18.6

2026-01-28

PREAI

Jinling Yan; Shao-Wu Zhang; Chihao Zhang; Weitian Huang; Jifan Shi; Luonan Chen

Utilizing Causal Network Markers to Identify Tipping Points ahead of Critical Transition 利用因果网络标记识别临界转变前的转折点

Advanced Science

IF14.1

2025-09-05

OAAI

Shirui Bian; Zezhou Wang; Siyang Leng; Wei Lin; Jifan Shi

Machine Learning Prediction of Short Cervix in Mid-Pregnancy Based on Multimodal Data from the First-Trimester Screening Period: An Observational Study in a High-Risk Population 基于孕早期筛查期多模态数据的中孕期宫颈缩短机器学习预测：高风险人群的观察性研究

Biomedicines 2025, Vol. 13, Page 2057

IF3.9

2025-08-23

PREAI

Shengyu Wu; Jiaqi Dong; Jifan Shi; Xiaoxian Qu; Yirong Bao; Xiaoyuan Mao; Mu Lv; Xuan Chen; Hao Ying

Reservoir cross mapping as a nonlinear framework for detecting dynamical causality 储层交叉映射作为一种非线性框架用于检测动力学因果关系

Cell Reports Physical Science

IF7.3

2025-07-04

OAAI

Ren Cao; Jintong Zhao; Chun Guan; Huanfei Ma; Jifan Shi; Siyang Leng

diffMIN: Reconstructing Sample-Specific Differential Gene Regulatory Networks Based on Mutual Information diffMIN：基于互信息重建样本特异性差异基因调控网络

ieee acm transactions on computational biology and bioinformatics

IF0

2025-07-01

PREAI

Songwei Ai; Yiwei Zhou; Wenkui Zou; Emeli Chatterjee; Guoping Li; Jifan Shi; Junjie Xiao; Juan Zhao

A Deep Learning Approach of Artificial Neural Network With Attention Mechanism to Predicting Marine Biogeochemistry Data

JOURNAL OF GEOPHYSICAL RESEARCH-BIOGEOSCIENCES

IF3.5

2025-03-01

PREAI

Liu, Mingzhi; Wang, Yipeng; Zhong, Guoqiang; Liu, Yongxin; Liu, Xiaoqing; Shi, Jifan; Che, Yangli; Bao, Rui

Detecting dynamical causality via intervened reservoir computing

COMMUNICATIONS PHYSICS

IF5.8

2024-07-12

OAAI

Zhao, Jintong; Gan, Zhongxue; Huang, Ruixi; Guan, Chun; Shi, Jifan; Leng, Siyang

Energy landscape decomposition for cell differentiation with proliferation effect

NATIONAL SCIENCE REVIEW

IF17.1

2022-06-17

OAAI

Shi, Jifan; Aihara, Kazuyuki; Li, Tiejun; Chen, Luonan

Embedding entropy: a nonlinear measure of dynamical causality

JOURNAL OF THE ROYAL SOCIETY INTERFACE

IF3.5

2022-03-30

OAAI

Shi, Jifan; Chen, Luonan; Aihara, Kazuyuki

Dynamics-based data science in biology

NATIONAL SCIENCE REVIEW

IF17.1

2021-02-12

OAAI

Shi, Jifan; Aihara, Kazuyuki; Chen, Luonan

Quantifying Direct Dependencies in Biological Networks by Multiscale Association Analysis

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

IF3.4

2020-03-01

PREAI

Shi, Jifan; Zhao, Juan; Liu, Xiaoping; Chen, Luonan; Li, Tiejun

Quantifying Waddington's epigenetic landscape: a comparison of single-cell potency measures

BRIEFINGS IN BIOINFORMATICS

IF7.7

2018-10-05

OAAI

Shi, Jifan; Teschendorff, Andrew E.; Chen, Weiyan; Chen, Luonan; Li, Tiejun

研究方向

从事计算生物学生命复杂系统的数学理论等领域的研究，主要涉及随机模型与算法生物体系建模与分析复杂网络推断临界现象分析等生物数学交叉方向

合作学者

合作期刊

Andrew E. Teschendorff