Alexandre P. Marand - Publications, H-index & Citations

Alexandre P. Marand

university of michigan

25H指数

69论文数

3.8K被引数

收录论文 24

发表时间

Single-cell chromatin accessibility and cis-regulatory element analyses in plants using the scPlantReg platform 利用scPlantReg平台进行植物单细胞染色质可及性和顺式调控元件分析

Nature Plants

IF13.6

2026-04-28

PREAI

Haidong Yan; Yarong Jin; Chengran Wang; Xinxin Zhang; Jiyuan Jia; Xiaofang Cao; Alexandre P. Marand; Mao Xia; Xuan Zhang; Yun Zhong; Xin Tang; Qiang Zhai; Tao Liu; Shilin Tian; Xiaoqin Li; Xiang Li; Jie Yao; Robert J. Schmitz; Zhaoming Wang; Linkai Huang

Widespread turnover of a conserved cis-regulatory code across 589 grass species

Molecular Biology and Evolution

IF5.3

2025-12-10

OAAI

Charles O Hale; Sheng-Kai Hsu; Jingjing Zhai; Aimee Schulz; Taylor Aubuchon-Elder; Germano Costa-Neto; Allen Gelfond; Mohamed Z El-Walid; Matthew Hufford; Elizabeth A Kellogg; Thuy La; Alexandre P Marand; Arun S Seetharam; Armin Scheben; Michelle C Stitzer; Travis Wrightsman; Maria Cinta Romay; Edward S Buckler; null; null

Advances in plant spatial multi-omics data analysis 植物空间多组学数据分析的进展

Trends in Plant Science

IF20.8

2025-10-28

PREAI

Jie Yao; Alexandre P. Marand; Yinqi Bai; Robert J. Schmitz; Longjiang Fan

A single-cell rice atlas integrates multi-species data to reveal cis-regulatory evolution 单细胞水稻图谱整合多物种数据以揭示顺式调控进化

Nature Plants

IF13.6

2025-09-17

OAAI

Haidong Yan; John P. Mendieta; Xuan Zhang; Ziliang Luo; Alexandre P. Marand; Yan Liang; Mark A. A. Minow; Yun Zhong; Yarong Jin; Hosung Jang; Xiang Li; Xinxin Zhang; Thomas Roulé; Doris Wagner; Xiaoyu Tu; Yonghong Wang; Daiquan Jiang; Silin Zhong; Linkai Huang; Susan R. Wessler; Robert J. Schmitz

A spatially resolved multi-omic single-cell atlas of soybean development 大豆发育的空间分辨多组学单细胞图谱

CELL

IF42.5

2025-01-01

OAAI

Zhang, Xuan; Luo, Ziliang; Marand, Alexandre P.; Yan, Haidong; Jang, Hosung; Bang, Sohyun; Mendieta, John P.; Minow, Mark A. A.; Schmitz, Robert J.

GenomicLinks: deep learning predictions of 3D chromatin interactions in the maize genome

genomics proteomics bioinformatics

IF2.8

2024-09-24

OAAI

Schlegel, Luca; Bhardwaj, Rohan; Shahryary, Yadollah; Demirturk, Defne; Marand, Alexandre P.; Schmitz, Robert J.; Johannes, Frank

scifi-ATAC-seq: massive-scale single-cell chromatin accessibility sequencing using combinatorial fluidic indexing

GENOME BIOLOGY

IF9.4

2024-04-08

OAAI

Zhang, Xuan; Marand, Alexandre P.; Yan, Haidong; Schmitz, Robert J.

Leveraging Single-Cell Populations to Uncover the Genetic Basis of Complex Traits

ANNUAL REVIEW OF GENETICS

IF8.6

2023-11-27

OAAI

Minow, Mark A. A.; Marand, Alexandre P.; Schmitz, Robert J.

Modeling chromatin state from sequence across angiosperms using recurrent convolutional neural networks

PLANT GENOME

IF3.8

2022-08-03

OAAI

Wrightsman, Travis; Marand, Alexandre P.; Crisp, Peter A.; Springer, Nathan M.; Buckler, Edward S.

A combinatorial indexing strategy for low-cost epigenomic profiling of plant single cells

PLANT COMMUNICATIONS

IF11.6

2022-07-01

OAAI

Tu, Xiaoyu; Marand, Alexandre P.; Schmitz, Robert J.; Zhong, Silin

Quality control and evaluation of plant epigenomics data Comment 植物表观基因组学数据的质量控制与评价

PLANT CELL

IF11.6

2021-10-14

OAAI

Schmitz, Robert J.; Marand, Alexandre P.; Zhang, Xuan; Mosher, Rebecca A.; Turck, Franziska; Chen, Xuemei; Axtell, Michael J.; Zhong, Xuehua; Brady, Siobhan M.; Megraw, Molly; Meyers, Blake C.

Assessing the regulatory potential of transposable elements using chromatin accessibility profiles of maize transposons 使用玉米转座子的染色质可及性概况评估转座因子的调节潜力

GENETICS

IF5.1

2020-11-20

OAAI

Noshay, Jaclyn M.; Marand, Alexandre P.; Anderson, Sarah N.; Zhou, Peng; Guerra, Maria Katherine Mejia; Lu, Zefu; O'Connor, Christine H.; Crisp, Peter A.; Hirsch, Candice N.; Schmitz, Robert J.; Springer, Nathan M.

Stable unmethylated DNA demarcates expressed genes and their cis-regulatory space in plant genomes 稳定的非甲基化DNA界定了植物基因组中表达的基因及其顺式调控空间

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2020-09-02

OAAI

Crisp, Peter A.; Marand, Alexandre P.; Noshay, Jaclyn M.; Zhou, Peng; Lu, Zefu; Schmitz, Robert J.; Springer, Nathan M.

Identification of a novel base J binding protein complex involved in RNA polymerase II transcription termination in trypanosomes

PLOS GENETICS

IF3.7

2020-02-21

OAAI

Kieft, Rudo; Zhang, Yang; Marand, Alexandre P.; Moran, Jose Dagoberto; Bridger, Robert; Wells, Lance; Schmitz, Robert J.; Sabatini, Robert

Widespread long-range cis-regulatory elements in the maize genome (vol 5, pg 1237, 2019)

NATURE PLANTS

IF13.6

2020-02-06

OAAI

Ricci, William A.; Lu, Zefu; Ji, Lexiang; Marand, Alexandre P.; Ethridge, Christina L.; Murphy, Nathalie G.; Noshay, Jaclyn M.; Galli, Mary; Mejia-Guerra, Maria Katherine; Colome-Tatche, Maria; Johannes, Frank; Rowley, M. Jordan; Corces, Victor G.; Zhai, Jixian; Scanlon, Michael J.; Buckler, Edward S.; Gallavotti, Andrea; Springer, Nathan M.; Schmitz, Robert J.; Zhang, Xiaoyu

Widespread long-range cis-regulatory elements in the maize genome 玉米基因组中广泛存在的长程顺式调控元件

NATURE PLANTS

IF13.6

2019-11-18

254

OAAI

The prevalence, evolution and chromatin signatures of plant regulatory elements 植物调控元件的流行、进化和染色质特征

NATURE PLANTS

IF13.6

2019-11-18

214

PREAI