Yang Young Lu - Publications, H-index & Citations

Yang Young Lu

University of Waterloo

11H指数

52论文数

1.7K被引数

收录论文 13

发表时间

Scikit-bio: a fundamental Python library for biological omic data analysis Scikit-bio: 用于生物组学数据分析的基本Python库

Nature Methods

IF32.1

2025-12-11

PREAI

Matthew Aton; Daniel McDonald; Jorge Cañardo Alastuey; Raeed Azom; Paarth Batra; Valentyn Bezshapkin; Evan Bolyen; Alexander Cagle; J. Gregory Caporaso; Justine W. Debelius; Kestrel Gorlick; Nirmitha Hamsanipally; Lars Hunger; Aryan Keluskar; Disen Liao; Yang Young Lu; Jose A. Navas-Molina; Anders Pitman; Jai Ram Rideout; Anton Sazonov; Bharath Sathappan; Karen Schwarzberg Lipson; Igor Sfiligoi; Chris Tapo; Yoshiki Vázquez-Baeza; Zijun Wu; Zhenjiang Zech Xu; Mingsong Sam Ye; Jianshu Zhao; Rob Knight; James T. Morton; Qiyun Zhu

Error-controlled non-additive interaction discovery in machine learning models 误差控制下的非加性交互作用发现于机器学习模型

Nature Machine Intelligence

IF23.9

2025-09-22

OAAI

Winston Chen; Yifan Jiang; William Stafford Noble; Yang Young Lu

Modeling microbiome-trait associations with taxonomy-adaptive neural networks 利用分类适应性神经网络建模微生物组-性状关联

MICROBIOME

IF12.7

2025-03-29

OAAI

Jiang, Yifan; Aton, Matthew; Zhu, Qiyun; Lu, Yang Young

The Crux Toolkit for Analysis of Bottom-Up Tandem Mass Spectrometry Proteomics Data

JOURNAL OF PROTEOME RESEARCH

IF3.6

2023-01-04

OAAI

Kertesz-Farkas, Attila; Acquaye, Frank Lawrence Nii Adoquaye; Bhimani, Kishankumar; Eng, Jimmy K.; Fondrie, William E.; Grant, Charles; Hoopmann, Michael R.; Lin, Andy; Lu, Yang Y.; Moritz, Robert L.; MacCoss, Michael J.; Noble, William Stafford

Metric learning for comparing genomic data with triplet network

BRIEFINGS IN BIOINFORMATICS

IF7.7

2022-08-31

PREAI

Ma, Zhi; Lu, Yang Young; Wang, Yiwen; Lin, Renhao; Yang, Zizi; Zhang, Fang; Wang, Ying

A wider field of view to predict expression

NATURE METHODS

IF32.1

2021-10-04

OAAI

Lu, Yang Young; Noble, William Stafford

Joint Precursor Elution Profile Inference via Regression for Peptide Detection in Data-Independent Acquisition Mass Spectra

JOURNAL OF PROTEOME RESEARCH

IF3.6

2018-10-26

OAAI

Hu, Alex; Lu, Yang Young; Bilmes, Jeff; Noble, William Stafford

Background Adjusted Alignment-Free Dissimilarity Measures Improve the Detection of Horizontal Gene Transfer

FRONTIERS IN MICROBIOLOGY

IF4.5

2018-04-16

OAAI

Tang, Kujin; Lu, Yang Young; Sun, Fengzhu

Towards enhanced and interpretable clustering/classification in integrative genomics

NUCLEIC ACIDS RESEARCH

IF13.1

2017-08-30

OAAI

Lu, Yang Young; Lv, Jinchi; Fuhrman, Jed A.; Sun, Fengzhu

VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data VirFinder: 一种基于k-mer的新型工具，用于从组装的宏基因组数据中识别病毒序列

MICROBIOME

IF12.7

2017-07-06

412

OAAI

Ren, Jie; Ahlgren, Nathan A.; Lu, Yang Young; Fuhrman, Jed A.; Sun, Fengzhu

CAFE: aCcelerated Alignment-FrEe sequence analysis

NUCLEIC ACIDS RESEARCH

IF13.1

2017-05-03

OAAI

Lu, Yang Young; Tang, Kujin; Ren, Jie; Fuhrman, Jed A.; Waterman, Michael S.; Sun, Fengzhu

Alignment-free d2* oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences

NUCLEIC ACIDS RESEARCH

IF13.1

2016-11-28

202

OAAI

Ahlgren, Nathan A.; Ren, Jie; Lu, Yang Young; Fuhrman, Jed A.; Sun, Fengzhu

Fast and Memory-Efficient Searching of Large-Scale Mass Spectrometry Data Using Tide 使用Tide进行大规模质谱数据的快速且内存高效的搜索

Journal of Proteome Research

IF3.6

OAAI

Attila Kertesz-Farkas; Frank Lawrence Nii Adoquaye Acquaye; Vladislav Ostapenko; Rufino Haroldo Locon; Yang Lu; Charles E. Grant; William Stafford Noble

研究方向