Philip W. Fowler - Publications, H-index & Citations

Philip W. Fowler

University of Oxford

53H指数

249论文数

9.4K被引数

收录论文 61

发表时间

Predicting pyrazinamide resistance in Mycobacterium tuberculosis using a graph convolutional network 利用图卷积网络预测结核分枝杆菌对吡嗪酰胺的耐药性

BMC Microbiology

IF4.2

2026-03-03

OAAI

Dylan Dissanayake; Viktoria Brunner; Dylan Adlard; Joseph A. Morrone; Philip W. Fowler

Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny 解决SARS-CoV-2系统发育中大流行范围的系统错误

Nature Methods

IF32.1

2026-02-09

OAAI

Martin Hunt; Angie S. Hinrichs; Daniel Anderson; Lily Karim; Bethany L. Dearlove; Jeff Knaggs; Bede Constantinides; Philip W. Fowler; Gillian Rodger; Teresa Street; Sheila Lumley; Hermione Webster; Theo Sanderson; Christopher Ruis; Benjamin Kotzen; Nicola de Maio; Lucas N. Amenga-Etego; Dominic S. Y. Amuzu; Martin Avaro; Gordon A. Awandare; Reuben Ayivor-Djanie; Timothy Barkham; Matthew Bashton; Elizabeth M. Batty; Yaw Bediako; Denise De Belder; Estefania Benedetti; Andreas Bergthaler; Stefan A. Boers; Josefina Campos; Rosina Afua Ampomah Carr; Yuan Yi Constance Chen; Facundo Cuba; Maria Elena Dattero; Wanwisa Dejnirattisai; Alexander Dilthey; Kwabena Obeng Duedu; Lukas Endler; Ilka Engelmann; Ngiambudulu M. Francisco; Jonas Fuchs; Etienne Z. Gnimpieba; Soraya Groc; Jones Gyamfi; Dennis Heemskerk; Torsten Houwaart; Nei-yuan Hsiao; Matthew Huska; Martin Hölzer; Arash Iranzadeh; Hanna Jarva; Chandima Jeewandara; Bani Jolly; Rageema Joseph; Ravi Kant; Karrie Ko Kwan Ki; Satu Kurkela; Maija Lappalainen; Marie Lataretu; Jacob Lemieux; Chang Liu; Gathsaurie Neelika Malavige; Tapfumanei Mashe; Juthathip Mongkolsapaya; Brigitte Montes; Jose Arturo Molina Mora; Collins M. Morang’a; Bernard Mvula; Niranjan Nagarajan; Andrew Nelson; Joyce M. Ngoi; Joana Paula da Paixão; Marcus Panning; Tomas Poklepovich; Peter K. Quashie; Diyanath Ranasinghe; Mara Russo; James Emmanuel San; Nicholas D. Sanderson; Vinod Scaria; Gavin Screaton; October Michael Sessions; Tarja Sironen; Abay Sisay; Darren Smith; Teemu Smura; Piyada Supasa; Chayaporn Suphavilai; Jeremy Swann; Houriiyah Tegally; Bryan Tegomoh; Olli Vapalahti; Andreas Walker; Robert J. Wilkinson; Carolyn Williamson; Xavier Zair; Tulio de Oliveira; Timothy EA Peto; Derrick Crook; Russell Corbett-Detig; Zamin Iqbal

Characterizing the performance of an antibiotic resistance prediction tool, gnomonicus, using a diverse test set of 2,663 Mycobacterium tuberculosis samples 使用由2,663份分枝杆菌(Mycobacterium tuberculosis)样本组成的多样化测试集，表征抗生素耐药性预测工具gnomonicus的性能。

MICROBIAL GENOMICS

IF4

2025-12-01

PREAI

Westhead, Jeremy; Baker, Catriona S.; Brouard, Marc; Colpus, Matthew; Constantinides, Bede; Hall, Alexandra; Knaggs, Jeff; Alves, Marcela Lopes; Spies, Ruan; Thai, Hieu; Surrall, Sarah; Govender, Kumeren; Peto, Timothy E. A.; Crook, Derrick W.; Omar, Shaheed V.; Turner, Robert; Fowler, Philip W.

Evaluating 12 automated, whole-genome sequencing analysis pipelines for Mycobacterium tuberculosis complex: a comparative study 评估12种针对结核分枝杆菌复合群的全基因组测序分析自动化流程：一项比较研究

The Lancet Microbe

IF0

2025-10-21

OAAI

Ruan Spies; Derrick W Crook; Timothy E A Peto; Philip W Fowler; Robert Turner; Hieu Thai; James A Watson; Timothy M Walker

Subpopulations in clinical samples of M. tuberculosis can give rise to rifampicin resistance and shed light on how resistance is acquired 结核分枝杆菌（M. tuberculosis）临床样本中的亚群可以导致利福平耐药，并阐明耐药性是如何获得的。

JAC-ANTIMICROBIAL RESISTANCE

IF3.3

2025-10-01

OAAI

Brunner, Viktoria M.; Fowler, Philip W.

Enhancement of midwives' and child healthcare nurses' attitudes towards the WHO's recommendations following breastfeeding training: A quasi-experimental study 通过母乳喂养培训提升助产士和儿童保健护士对WHO建议的态度：一项准实验研究

SEXUAL & REPRODUCTIVE HEALTHCARE

IF1.7

2025-10-01

OAAI

Blixt, Ingrid; Fowler, Philip; Axelsson, Ove; Funkquist, Eva-Lotta

Rapid, accurate, and reproducible de novo prediction of resistance to antituberculars 快速、准确且可重复的对抗结核药物的耐药性从头预测

MSPHERE

IF3.1

2025-09-01

PREAI

Zhang, Xibei; Wan, Shunzhou; Bhati, Agastya P.; Fowler, Philip W.; Coveney, Peter V.

Infection Inspection: using the power of citizen science for image-based prediction of antibiotic resistance in Escherichia coli treated with ciprofloxacin

SCIENTIFIC REPORTS

IF3.9

2024-08-22

OAAI

Farrar, Alison; Feehily, Conor; Turner, Piers; Zagajewski, Alexander; Chatzimichail, Stelios; Crook, Derrick; Andersson, Monique; Oakley, Sarah; Barrett, Lucinda; El Sayyed, Hafez; Fowler, Philip W.; Nellaker, Christoffer; Kapanidis, Achillefs N.; Stoesser, Nicole

Prediction of pyrazinamide resistance in Mycobacterium tuberculosis using structure-based machine-learning approaches

JAC-ANTIMICROBIAL RESISTANCE

IF3.3

2024-03-18

OAAI

Carter, Joshua J.; Walker, Timothy M.; Walker, A. Sarah; Whitfield, Michael G.; Morlock, Glenn P.; Lynch, Charlotte, I; Adlard, Dylan; Peto, Timothy E. A.; Posey, James E.; Crook, Derrick W.; Fowler, Philip W.

Compensatory mutations are associated with increased in vitro growth in resistant clinical samples of Mycobacterium tuberculosis 代偿性突变与结核分枝杆菌耐药临床样本的体外生长增加有关

MICROBIAL GENOMICS

IF4

2024-02-05

OAAI

Brunner, Viktoria M.; Fowler, Philip W.

Quantitative measurement of antibiotic resistance in Mycobacterium tuberculosis reveals genetic determinants of resistance and susceptibility in a target gene approach 结核分枝杆菌抗生素耐药性的定量测量揭示了靶基因方法中耐药性和敏感性的遗传决定因素

NATURE COMMUNICATIONS

IF15.7

2024-01-12

OAAI

Barilar, Ivan; Battaglia, Simone; Borroni, Emanuele; Brandao, Angela Pires; Brankin, Alice; Cabibbe, Andrea Maurizio; Carter, Joshua; Chetty, Darren; Cirillo, Daniela Maria; Claxton, Pauline; Clifton, David A.; Cohen, Ted; Coronel, Jorge; Crook, Derrick W.; Dreyer, Viola; Earle, Sarah G.; Escuyer, Vincent; Ferrazoli, Lucilaine; Fowler, Philip W.; Gao, George Fu; Gardy, Jennifer; Gharbia, Saheer; Ghisi, Kelen Teixeira; Ghodousi, Arash; Gibertoni Cruz, Ana Luiza; Grandjean, Louis; Grazian, Clara; Groenheit, Ramona; Guthrie, Jennifer L.; He, Wencong; Hoffmann, Harald; Hoosdally, Sarah J.; Hunt, Martin; Iqbal, Zamin; Ismail, Nazir Ahmed; Jarrett, Lisa; Joseph, Lavania; Jou, Ruwen; Kambli, Priti; Khot, Rukhsar; Knaggs, Jeff; Koch, Anastasia; Kohlerschmidt, Donna; Kouchaki, Samaneh; Lachapelle, Alexander S.; Lalvani, Ajit; Lapierre, Simon Grandjean; Laurenson, Ian F.; Letcher, Brice; Lin, Wan-Hsuan; Liu, Chunfa; Liu, Dongxin; Malone, Kerri M.; Mandal, Ayan; Mansjoe, Mikael; Calisto Matias, Daniela Vicente Lucena; Meintjes, Graeme; de Freitas Mendes, Flavia; Merker, Matthias; Mihalic, Marina; Millard, James; Miotto, Paolo; Mistry, Nerges; Moore, David; Musser, Kimberlee A.; Ngcamu, Dumisani; Nhung, Hoang Ngoc; Niemann, Stefan; Nilgiriwala, Kayzad Soli; Nimmo, Camus; O'Donnell, Max; Okozi, Nana; Oliveira, Rosangela Siqueira; Omar, Shaheed Vally; Paton, Nicholas; Peto, Timothy E. A.; Pinhata, Juliana Maira Watanabe; Plesnik, Sara; Puyen, Zully M.; Rabodoarivelo, Marie Sylvianne; Rakotosamimanana, Niaina; Rancoita, Paola M. V.; Rathod, Priti; Robinson, Esther Rhiannon; Rodger, Gillian; Rodrigues, Camilla; Rodwell, Timothy C.; Roohi, Aysha; Santos-Lazaro, David; Shah, Sanchi; Smith, Grace; Kohl, Thomas Andreas; Solano, Walter; Spitaleri, Andrea; Steyn, Adrie J. C.; Supply, Philip; Surve, Utkarsha; Tahseen, Sabira; Thuong, Nguyen Thuy Thuong; Thwaites, Guy; Todt, Katharina; Trovato, Alberto; Utpatel, Christian; Van Rie, Annelies; Vijay, Srinivasan; Walker, A. Sarah; Walker, Timothy M.; Warren, Robin; Werngren, Jim; Wijkander, Maria; Wilkinson, Robert J.; Wilson, Daniel J.; Wintringer, Penelope; Xiao, Yu-Xin; Yang, Yang; Yanlin, Zhao; Yao, Shen-Yuan; Zhu, Baoli

Discordance between different bioinformatic methods for identifying resistance genes from short-read genomic data, with a focus on Escherichia coli

MICROBIAL GENOMICS

IF4

2023-12-15

OAAI

Davies, Timothy J.; Swann, Jeremy; Sheppard, Anna E.; Pickford, Hayleigh; Lipworth, Samuel; AbuOun, Manal; Ellington, Matthew J.; Fowler, Philip W.; Hopkins, Susan; Hopkins, Katie L.; Crook, Derrick W.; Peto, Timothy E. A.; Anjum, Muna F.; Walker, A. Sarah; Stoesser, Nicole

Reply: Epidemiological cut-off values for a 96-well broth microdilution plate for high-throughput research antibiotic susceptibility testing of M. tuberculosis

EUROPEAN RESPIRATORY JOURNAL

IF21

2023-05-05

OAAI

Fowler, Philip W.

Inclusion of minor alleles improves catalogue-based prediction of fluoroquinolone resistance in Mycobacterium tuberculosis

JAC-ANTIMICROBIAL RESISTANCE

IF3.3

2023-04-04

OAAI

Brankin, Alice E.; Fowler, Philip W.

Predicting antibiotic resistance in complex protein targets using alchemical free energy methods

JOURNAL OF COMPUTATIONAL CHEMISTRY

IF4.8

2022-08-25

OAAI

Brankin, Alice E.; Fowler, Philip W.

A crowd of BashTheBug volunteers reproducibly and accurately measure the minimum inhibitory concentrations of 13 antitubercular drugs from photographs of 96-well broth microdilution plates 一群BashTheBug志愿者从96孔肉汤微量稀释板的照片中可重现地准确测量13种抗结核药物的最低抑菌浓度

ELIFE

IF0

2022-05-19

OAAI

Fowler, Philip W.; Wright, Carla; Spiers, Helen; Zhu, Tingting; Baeten, Elisabeth M. L.; Hoosdally, Sarah W.; Cruz, Ana L. Gibertoni; Roohi, Aysha; Kouchaki, Samaneh; Walker, Timothy M.; Peto, Timothy E. A.; Miller, Grant; Lintott, Chris; Clifton, David; Crook, Derrick W.; Walker, A. Sarah

Epidemiological cut-off values for a 96-well broth microdilution plate for high-throughput research antibiotic susceptibility testing of M. tuberculosis 用于结核分枝杆菌高通量研究抗生素敏感性测试的96孔肉汤微量稀释板的流行病学临界值

EUROPEAN RESPIRATORY JOURNAL

IF21

2022-03-17

OAAI

Fowler, Philip W.; Barilar, Ivan; Battaglia, Simone; Borroni, Emanuele; Brandao, Angela Pires; Brankin, Alice; Cabibbe, Andrea Maurizio; Carter, Joshua; Cirillo, Daniela Maria; Claxton, Pauline; Clifton, David A.; Cohen, Ted; Coronel, Jorge; Crook, Derrick W.; Dreyer, Viola; Earle, Sarah G.; Escuyer, Vincent; Ferrazoli, Lucilaine; Gao, George Fu; Gardy, Jennifer; Gharbia, Saheer; Ghisi, Kelen Teixeira; Ghodousi, Arash; Gibertoni Cruz, Ana Luiza; Grandjean, Louis; Grazian, Clara; Groenheit, Ramona; Guthrie, Jennifer L.; He, Wencong; Hoffmann, Harald; Hoosdally, Sarah J.; Hunt, Martin; Iqbal, Zamin; Ismail, Nazir Ahmed; Jarrett, Lisa; Joseph, Lavania; Jou, Ruwen; Kambli, Priti; Khot, Rukhsar; Knaggs, Jeff; Koch, Anastasia; Kohlerschmidt, Donna; Kouchaki, Samaneh; Lachapelle, Alexander S.; Lalvani, Ajit; Lapierre, Simon Grandjean; Laurenson, Ian F.; Letcher, Brice; Lin, Wan-Hsuan; Liu, Chunfa; Liu, Dongxin; Malone, Kerri M.; Mandal, Ayan; Mansjo, Mikael; Matias, Daniela; Meintjes, Graeme; Mendes, Flavia de Freitas; Merker, Matthias; Mihalic, Marina; Millard, James; Miotto, Paolo; Mistry, Nerges; Moore, David; Musser, Kimberlee A.; Ngcamu, Dumisani; Nhung, Hoang Ngoc; Niemann, Stefan; Nilgiriwala, Kayzad Soli; Nimmo, Camus; Okozi, Nana; Oliveira, Rosangela Siqueira; Omar, Shaheed Vally; Paton, Nicholas; Peto, Timothy E. A.; Watanabe Pinhata, Juliana Maira; Plesnik, Sara; Puyen, Zully M.; Rabodoarivelo, Marie Sylvianne; Rakotosamimanana, Niaina; Rancoita, Paola M., V; Rathod, Priti; Robinson, Esther; Rodger, Gillian; Rodrigues, Camilla; Rodwell, Timothy C.; Roohi, Aysha; Santos-Lazaro, David; Shah, Sanchi; Kohl, Thomas Andreas; Smith, Grace; Solano, Walter; Spitaleri, Andrea; Supply, Philip; Surve, Utkarsha; Tahseen, Sabira; Thuong, Nguyen Thuy; Thwaites, Guy; Todt, Katharina; Trovato, Alberto; Utpatel, Christian; Van Rie, Annelies; Vijay, Srinivasan; Walker, Timothy M.; Walker, A. Sarah; Warren, Robin; Werngren, Jim; Wijkander, Maria; Wilkinson, Robert J.; Wilson, Daniel J.; Wintringer, Penelope; Xiao, Yu-Xin; Yang; Zhao Yanlin; Yao, Shen-Yuan; Zhu, Baoli

How quickly can we predict trimethoprim resistance using alchemical free energy methods?

INTERFACE FOCUS

IF4

2020-10-16

OAAI

Fowler, Philip W.

Differential occupational risks to healthcare workers from SARS-CoV-2 observed during a prospective observational study

ELIFE

IF0

2020-08-21

183

OAAI

Eyre, David W.; Lumley, Sheila F.; O'Donnell, Denise; Campbell, Mark; Sims, Elizabeth; Lawson, Elaine; Warren, Fiona; James, Tim; Cox, Stuart; Howarth, Alison; Doherty, George; Hatch, Stephanie B.; Kavanagh, James; Chau, Kevin K.; Fowler, Philip W.; Swann, Jeremy; Volk, Denis; Yang-Turner, Fan; Stoesser, Nicole; Matthews, Philippa C.; Dudareva, Maria; Davies, Timothy; Shaw, Robert H.; Peto, Leon; Downs, Louise O.; Vogt, Alexander; Amini, Ali; Young, Bernadette C.; Drennan, Philip George; Mentzer, Alexander J.; Skelly, Donal T.; Karpe, Fredrik; Neville, Matt J.; Andersson, Monique; Brent, Andrew J.; Jones, Nicola; Ferreira, Lucas Martins; Christott, Thomas; Marsden, Brian D.; Hoosdally, Sarah; Cornall, Richard; Crook, Derrick W.; Stuart, David, I; Screaton, Gavin; Peto, Timothy E. A.; Holthof, Bruno; O'Donnell, Anne-Marie; Ebner, Daniel; Conlon, Christopher P.; Jeffery, Katie; Walker, Timothy M.

Reconciling the Potentially Irreconcilable? Genotypic and Phenotypic Amoxicillin-Clavulanate Resistance in Escherichia coli

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

IF4.5

2020-05-21

OAAI

Davies, Timothy J.; Stoesser, Nicole; Sheppard, Anna E.; Abuoun, Manal; Fowler, Philip; Swann, Jeremy; Phuong Quan, T.; Griffiths, David; Vaughan, Alison; Morgan, Marcus; Phan, Hang T. T.; Jeffery, Katie J.; Andersson, Monique; Ellington, Matt J.; Ekelund, Oskar; Woodford, Neil; Mathers, Amy J.; Bonomo, Robert A.; Crook, Derrick W.; Peto, Tim E. A.; Anjum, Muna F.; Walker, A. Sarah

研究方向