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R

Ryan L. Hayes

University of California

19H指数
49论文数
1.4K被引数
收录论文 22
发表时间
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A sequence motif enables widespread use of noncanonical redox cofactors in natural enzymes一种序列基序使非经典氧化还原辅因子在天然酶中得到广泛应用
errNature Chemical Biology
IF13.7
err2026-09-09
err0
errOAAI
errSamer Saleh; Ning-Hsiang Hsu; Emma Luu; Vincent C. Martin; Hans Jefferson C. Ng; William B. Black; Shiding Zhang; Jin-Kwang Kim; Banumathi Sankaran; Andre H. T. Tran; Ryan L. Hayes; Justin B. Siegel; Feng Qiao; Han Li
err分享
err收藏
Accurate in silico predictions of modified RNA interactions to a prototypical RNA-binding protein with λ-dynamics使用λ-动力学对原型RNA结合蛋白的修饰RNA相互作用进行准确的计算机预测
errRNA
IF5
err2025-10-01
err0
errOAAI
errAngelo, Murphy; Bhargava, Yash; Kierzek, Elzbieta; Kierzek, Ryszard; Hayes, Ryan L.; Zhang, Wen; Vilseck, Jonah Z.; Aoki, Scott Takeo
err分享
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Multisite λ-Dynamics for Protein-DNA Binding Affinity Prediction多位点λ-动力学方法用于蛋白质-DNA结合亲和力预测
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2025-03-24
err0
PREAI
errAl Masri, Carmen; Vilseck, Jonah Z.; Yu, Jin; Hayes, Ryan L.
err分享
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How to Sample Dozens of Substitutions per Site with λ Dynamics
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2024-07-08
err3
errOAAI
errHayes, Ryan L.; Cervantes, Luis F.; Santos, Justin Cruz Abad; Samadi, Amirmasoud; Vilseck, Jonah Z.; Brooks III, Charles L.
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Selection pressures on evolution of ribonuclease H explored with rigorous free-energy-based design
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2024-01-09
err3
errOAAI
errHayes, Ryan L.; Nixon, Charlotte F.; Marqusee, Susan; Brooks III, Charles L.
err分享
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Optimizing Multisite λ-Dynamics Throughput with Charge Renormalization
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2022-03-14
err11
errOAAI
errVilseck, Jonah Z.; Cervantes, Luis F.; Hayes, Ryan L.; Brooks, Charles L., III
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Addressing Intersite Coupling Unlocks Large Combinatorial Chemical Spaces for Alchemical Free Energy Methods
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2022-03-07
err8
errOAAI
errHayes, Ryan L.; Vilseck, Jonah Z.; Brooks, Charles L., III
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BLaDE: A Basic Lambda Dynamics Engine for GPU-Accelerated Molecular Dynamics Free Energy Calculations
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2021-10-28
err29
errOAAI
errHayes, Ryan L.; Buckner, Joshua; Brooks, Charles L., III
err分享
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Generalizing the Discrete Gibbs Sampler-Based λ-Dynamics Approach for Multisite Sampling of Many Ligands
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2021-06-08
err10
errOAAI
errVilseck, Jonah Z.; Ding, Xinqiang; Hayes, Ryan L.; Brooks, Charles L.
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A strategy for proline and glycine mutations to proteins with alchemical free energy calculations
errJOURNAL OF COMPUTATIONAL CHEMISTRY
IF4.8
err2021-04-12
err17
errOAAI
errHayes, Ryan L.; Brooks, Charles L., III
err分享
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Automated, Accurate, and Scalable Relative Protein-Ligand Binding Free-Energy Calculations Using Lambda Dynamics
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2020-11-17
err56
errOAAI
errRaman, E. Prabhu; Paul, Thomas J.; Hayes, Ryan L.; Brooks, Charles L., III
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Ligand Modulates Cross-Coupling between Riboswitch Folding and Transcriptional Pausing配体调节核糖开关折叠和转录暂停之间的交叉偶联
errMOLECULAR CELL
IF16.6
err2018-11-01
err51
errOAAI
errWidom, Julia R.; Nedialkov, Yuri A.; Rai, Victoria; Hayes, Ryan L.; Brooks, Charles L., III; Artsimovitch, Irina; Walter, Nils G.
err分享
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CDOCKER and λ-dynamics for prospective prediction in D3R Grand Challenge 2
errJOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN
IF3.1
err2017-09-07
err13
errOAAI
errDing, Xinqiang; Hayes, Ryan L.; Vilseck, Jonah Z.; Charles, Murchtricia K.; Brooks, Charles L., III
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Gibbs Sampler-Based λ-Dynamics and Rao-Blackwell Estimator for Alchemical Free Energy Calculation
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2017-05-26
err36
errOAAI
errDing, Xinqiang; Vilseck, Jonah Z.; Hayes, Ryan L.; Brooks, Charles L., III
err分享
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Connecting the Sequence-Space of Bacterial Signaling Proteins to Phenotypes Using Coevolutionary Landscapes使用共同进化景观将细菌信号蛋白的序列空间与表型连接起来
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2016-09-07
err54
errOAAI
errCheng, R. R.; Nordesjo, O.; Hayes, R. L.; Levine, H.; Flores, S. C.; Onuchic, J. N.; Morcos, F.
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Magnesium Dependence of the RNA Free Energy Landscape
errBIOPHYSICAL JOURNAL
IF3.1
err2015-01-01
err1
errOAAI
errHayes, Ryan L.; Noel, Jeffrey K.; Mandic, Ana; Whitford, Paul C.; Sanbonmatsu, Karissa Y.; Mohanty, Udayan; Onuchic, Jose N.
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Intercellular Stress Reconstitution from Traction Force Data
errBIOPHYSICAL JOURNAL
IF3.1
err2014-08-01
err31
errOAAI
errZimmermann, Juliane; Hayes, Ryan L.; Basan, Markus; Onuchic, Jose N.; Rappel, Wouter-Jan; Levine, Herbert
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Reduced Model Captures Mg2+ -RNA Interaction Free Energy of Riboswitches
errBIOPHYSICAL JOURNAL
IF3.1
err2014-04-01
err45
errOAAI
errHayes, Ryan L.; Noel, Jeffrey K.; Whitford, Paul C.; Mohanty, Udayan; Sanbonmatsu, Karissa Y.; Onuchic, Jose N.
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Calculating Intercellular Stress in a Model of Collectively Moving Cells
errBIOPHYSICAL JOURNAL
IF3.1
err2014-01-01
err0
errOAAI
errZimmermann, Juliane; Basan, Markus; Hayes, Ryan; Rappel, Wouter-Jan; Ben-Jacob, Eshel; Levine, Herbert
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Magnesium Fluctuations Modulate RNA Dynamics in the SAM-I Riboswitch
errJOURNAL OF THE AMERICAN CHEMICAL SOCIETY
IF15.6
err2012-07-16
err88
errOAAI
errHayes, Ryan L.; Noel, Jeffrey K.; Mohanty, Udayan; Whitford, Paul C.; Hennelly, Scott P.; Onuchic, Jose N.; Sanbonmatsu, Karissa Y.
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研究方向

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合作学者
合作期刊
C
Charles L. Brooks
H 指数: 104 · 论文数: 675
J
José N. Onuchic
H 指数: 104 · 论文数: 613
H
Herbert Levine
H 指数: 97 · 论文数: 850
E
Eshel Ben‐Jacob
H 指数: 85 · 论文数: 532
N
Nils G. Walter
H 指数: 63 · 论文数: 390
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