Andrea Pagnani - Publications, H-index & Citations

Andrea Pagnani

Polytechnic University of Turin

32H指数

131论文数

6.4K被引数

收录论文 25

发表时间

Controllable protein design via autoregressive direct coupling analysis conditioned on principal components 基于主成分条件下的自回归直接耦合分析可控蛋白质设计

PLoS Computational Biology

IF3.6

2026-02-01

PREAI

Caredda, Francesco; Gennai, Lisa; De Los Rios, Paolo; Pagnani, Andrea

A competition network connects Rab5 and Rab11 GTPases at the surface of endocytic structures 竞争网络在囊泡结构表面连接Rab5和Rab11 GTPases

ISCIENCE

IF4.1

2025-04-01

OAAI

Ferro, Elsi; Tealdi, Simone; Margaria, Jean Piero; De Santis, Maria Chiara; Gozzelino, Luca; Cunial, Marta; Bena, Chiara Enrico; Franco, Irene; Hirsch, Emilio; Gamba, Andrea; Pagnani, Andrea; Bosia, Carla; Campa, Carlo Cosimo

Reconstruction of Ancestral Protein Sequences Using Autoregressive Generative Models 利用自回归生成模型重建祖先蛋白质序列

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2025-03-26

OAAI

De Leonardis, Matteo; Pagnani, Andrea; Barrat-Charlaix, Pierre

Direct coupling analysis and the attention mechanism 直接耦合分析与注意力机制

BMC BIOINFORMATICS

IF3.3

2025-02-06

OAAI

Caredda, Francesco; Pagnani, Andrea

Mammography classification with multi-view deep learning techniques: and transformer-based architectures 基于多视图深度学习技术的乳腺x线摄影分类: 和基于transformer的架构

MEDICAL IMAGE ANALYSIS

IF11.8

2025-01-01

OAAI

Manigrasso, Francesco; Milazzo, Rosario; Russo, Alessandro Sebastian; Lamberti, Fabrizio; Strand, Fredrik; Pagnani, Andrea; Morra, Lia

Relationship between fitness and heterogeneity in exponentially growing microbial populations

BIOPHYSICAL JOURNAL

IF3.1

2022-05-01

OAAI

Muntoni, Anna Paola; Braunstein, Alfredo; Pagnani, Andrea; De Martino, Daniele; De Martino, Andrea

Efficient generative modeling of protein sequences using simple autoregressive models (vol 12, pg 5800, 2021)

NATURE COMMUNICATIONS

IF15.7

2022-04-01

OAAI

Trinquier, Jeanne; Uguzzoni, Guido; Pagnani, Andrea; Zamponi, Francesco; Weigt, Martin

Efficient generative modeling of protein sequences using simple autoregressive models

NATURE COMMUNICATIONS

IF15.7

2021-10-04

OAAI

Trinquier, Jeanne; Uguzzoni, Guido; Pagnani, Andrea; Zamponi, Francesco; Weigt, Martin

Unsupervised Inference of Protein Fitness Landscape from Deep Mutational Scan

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2020-08-08

OAAI

Fernandez-de-Cossio-Diaz, Jorge; Uguzzoni, Guido; Pagnani, Andrea

A common root for coevolution and substitution rate variability in protein sequence evolution

SCIENTIFIC REPORTS

IF3.9

2019-12-02

OAAI

Rizzato, Francesca; Zamuner, Stefano; Pagnani, Andrea; Laio, Alessandro

Somatic mutagenesis in satellite cells associates with human skeletal muscle aging

NATURE COMMUNICATIONS

IF15.7

2018-02-23

OAAI

Franco, Irene; Johansson, Anna; Olsson, Karl; Vrtacnik, Peter; Lundin, Par; Helgadottir, Hafdis T.; Larsson, Malin; Revechon, Gwladys; Bosia, Carla; Pagnani, Andrea; Provero, Paolo; Gustafsson, Thomas; Fischer, Helene; Eriksson, Maria

An analytic approximation of the feasible space of metabolic networks

NATURE COMMUNICATIONS

IF15.7

2017-04-06

OAAI

Braunstein, Alfredo; Muntoni, Anna Paola; Pagnani, Andrea

ceRNA crosstalk stabilizes protein expression and affects the correlation pattern of interacting proteins

SCIENTIFIC REPORTS

IF3.9

2017-03-07

OAAI

Martirosyan, Araks; De Martino, Andrea; Pagnani, Andrea; Marinari, Enzo

RNAs competing for microRNAs mutually influence their fluctuations in a highly non-linear microRNA-dependent manner in single cells

GENOME BIOLOGY

IF9.4

2017-02-20

OAAI

Bosia, Carla; Sgro, Francesco; Conti, Laura; Baldassi, Carlo; Brusa, Davide; Cavallo, Federica; Di Cunto, Ferdinando; Turco, Emilia; Pagnani, Andrea; Zecchina, Riccardo

Simultaneous identification of specifically interacting paralogs and interprotein contacts by direct coupling analysis

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2016-10-11

OAAI

Gueudre, Thomas; Baldassi, Carlo; Zamparo, Marco; Weigt, Martin; Pagnani, Andrea

Regularization and decimation pseudolikelihood approaches to statistical inference in XY spin models

PHYSICAL REVIEW B

IF3.7

2016-07-15

OAAI

Tyagi, Payal; Marruzzo, Alessia; Pagnani, Andrea; Antenucci, Fabrizio; Leuzzi, Luca

SLAMF1 regulation of chemotaxis and autophagy determines CLL patient response

JOURNAL OF CLINICAL INVESTIGATION

IF13.6

2015-11-30

OAAI

Bologna, Cinzia; Buonincontri, Roberta; Serra, Sara; Vaisitti, Tiziana; Audrito, Valentina; Brusa, Davide; Pagnani, Andrea; Coscia, Marta; D'Arena, Giovanni; Mereu, Elisabetta; Piva, Roberto; Furman, Richard R.; Rossi, Davide; Gaidano, Gianluca; Terhorst, Cox; Deaglio, Silvia

The enzymatic activities of CD38 enhance CLL growth and trafficking: implications for therapeutic targeting

LEUKEMIA

IF13.4

2014-07-03

OAAI

Vaisitti, T.; Audrito, V.; Serra, S.; Buonincontri, R.; Sociali, G.; Mannino, E.; Pagnani, A.; Zucchetto, A.; Tissino, E.; Vitale, C.; Coscia, M.; Usai, C.; Pepper, C.; Gattei, V.; Bruzzone, S.; Deaglio, S.

Genome-wide analysis identifies a functional association of Tet1 and Polycomb repressive complex 2 in mouse embryonic stem cells

GENOME BIOLOGY

IF9.4

2013-08-29

157

OAAI

Neri, Francesco; Incarnato, Danny; Krepelova, Anna; Rapelli, Stefania; Pagnani, Andrea; Zecchina, Riccardo; Parlato, Caterina; Oliviero, Salvatore

Integrated transcriptional and competitive endogenous RNA networks are cross-regulated in permissive molecular environments

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2013-03-27

286

OAAI

Ala, Ugo; Karreth, Florian A.; Bosia, Carla; Pagnani, Andrea; Taulli, Riccardo; Leopold, Valentine; Tay, Yvonne; Provero, Paolo; Zecchina, Riccardo; Pandolfi, Pier Paolo

研究方向