Wouter Boomsma - Publications, H-index & Citations

Wouter Boomsma

university of copenhagen

31H指数

102论文数

3.6K被引数

收录论文 28

发表时间

The Importance of UBQLN2 Ubiquitylation for Its Turnover and Localization UBQLN2泛素化对其周转和定位的重要性

BIOCHEMISTRY

IF3

2025-12-01

PREAI

Gronbaek-Thygesen, Martin; Kampmeyer, Caroline; Eschger, Paula; Tatham, Michael H.; Arts, Marloes; Hofmann, Kay; Lindorff-Larsen, Kresten; Boomsma, Wouter; Hartmann-Petersen, Rasmus

Supervised Learning of Protein Melting Temperature: Cross-Species vs. Species-Specific Prediction 蛋白质熔解温度的监督学习：跨物种预测与物种特定预测

proteins structure function and bioinformatics

IF0

2025-07-14

OAAI

Sebastián García López; Jesper Salomon; Wouter Boomsma

Deep learning-assisted analysis of single-particle tracking for automated correlation between diffusion and function 深度学习辅助的单粒子追踪分析，用于扩散与功能之间的自动化相关性分析

NATURE METHODS

IF32.1

2025-05-08

PREAI

Kaestel-Hansen, Jacob; de Sautu, Marilina; Saminathan, Anand; Scanavachi, Gustavo; Bango Da Cunha Correia, Ricardo F.; Juma Nielsen, Annette; Bleshoy, Sara Vogt; Tsolakidis, Konstantinos; Boomsma, Wouter; Kirchhausen, Tomas; Hatzakis, Nikos S.

Foundation models of protein sequences: A brief overview

CURRENT OPINION IN STRUCTURAL BIOLOGY

IF7

2025-04-01

OAAI

Bjerregaard, Andreas; Groth, Peter Morch; Hauberg, Soren; Krogh, Anders; Boomsma, Wouter

Rapid protein stability prediction using deep learning representations 基于深度学习表示的快速蛋白质稳定性预测

ELIFE

IF0

2023-05-15

OAAI

Blaabjerg, Lasse M.; Kassem, Maher M.; Good, Lydia L.; Jonsson, Nicolas; Cagiada, Matteo; Johansson, Kristoffer E.; Boomsma, Wouter; Stein, Amelie; Lindorff-Larsen, Kresten

Lysine deserts prevent adventitious ubiquitylation of ubiquitin-proteasome components 赖氨酸沙漠阻止泛素-蛋白酶体组分的不定泛素化

CELLULAR AND MOLECULAR LIFE SCIENCES

IF6.2

2023-05-09

OAAI

Kampmeyer, Caroline; Gronbaek-Thygesen, Martin; Oelerich, Nicole; Tatham, Michael H.; Cagiada, Matteo; Lindorff-Larsen, Kresten; Boomsma, Wouter; Hofmann, Kay; Hartmann-Petersen, Rasmus

A context-dependent and disordered ubiquitin-binding motif

CELLULAR AND MOLECULAR LIFE SCIENCES

IF6.2

2022-08-16

OAAI

Dreier, Jesper E.; Prestel, Andreas; Martins, Joao M.; Brondum, Sebastian S.; Nielsen, Olaf; Garbers, Anna E.; Suga, Hiroaki; Boomsma, Wouter; Rogers, Joseph M.; Hartmann-Petersen, Rasmus; Kragelund, Birthe B.

Learning meaningful representations of protein sequences

NATURE COMMUNICATIONS

IF15.7

2022-04-08

OAAI

Detlefsen, Nicki Skafte; Hauberg, Soren; Boomsma, Wouter

Single-particle diffusional fingerprinting: A machine-learning framework for quantitative analysis of heterogeneous diffusion

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2021-07-28

OAAI

Pinholt, Henrik D.; Bohr, Soren S-R; Iversen, Josephine F.; Boomsma, Wouter; Hatzakis, Nikos S.

Developing and validating COVID-19 adverse outcome risk prediction models from a bi-national European cohort of 5594 patients

SCIENTIFIC REPORTS

IF3.9

2021-02-05

OAAI

Jimenez-Solem, Espen; Petersen, Tonny S.; Hansen, Casper; Hansen, Christian; Lioma, Christina; Igel, Christian; Boomsma, Wouter; Krause, Oswin; Lorenzen, Stephan; Selvan, Raghavendra; Petersen, Janne; Nyeland, Martin Erik; Ankarfeldt, Mikkel Zollner; Virenfeldt, Gert Mehl; Winther-Jensen, Matilde; Linneberg, Allan; Ghazi, Mostafa Mehdipour; Detlefsen, Nicki; Lauritzen, Andreas David; Smith, Abraham George; de Bruijne, Marleen; Ibragimov, Bulat; Petersen, Jens; Lillholm, Martin; Middleton, Jon; Mogensen, Stine Hasling; Thorsen-Meyer, Hans-Christian; Perner, Anders; Helleberg, Marie; Kaas-Hansen, Benjamin Skov; Bonde, Mikkel; Bonde, Alexander; Pai, Akshay; Nielsen, Mads; Sillesen, Martin

Orchestration of signaling by structural disorder in class 1 cytokine receptors

CELL COMMUNICATION AND SIGNALING

IF8.9

2020-08-24

OAAI

Seiffert, Pernille; Bugge, Katrine; Nygaard, Mads; Haxholm, Gitte W.; Martinsen, Jacob H.; Pedersen, Martin N.; Arleth, Lise; Boomsma, Wouter; Kragelund, Birthe B.

The PCNA interaction motifs revisited: thinking outside the PIP-box

CELLULAR AND MOLECULAR LIFE SCIENCES

IF6.2

2019-05-27

OAAI

Prestel, Andreas; Wichmann, Nanna; Martins, Joao M.; Marabini, Riccardo; Kassem, Noah; Broendum, Sebastian S.; Otterlei, Marit; Nielsen, Olaf; Willemoes, Martin; Ploug, Michael; Boomsma, Wouter; Kragelund, Birthe B.

Barnaba: software for analysis of nucleic acid structures and trajectories

RNA

IF5

2018-11-12

OAAI

Bottaro, Sandro; Bussi, Giovanni; Pinamonti, Giovanni; Reisser, Sabine; Boomsma, Wouter; Lindorff-Larsen, Kresten

Structure of the Bacterial Cytoskeleton Protein Bactofilin by NMR Chemical Shifts and Sequence Variation

BIOPHYSICAL JOURNAL

IF3.1

2016-06-01

OAAI

Kassem, Maher M.; Wang, Yong; Boomsma, Wouter; Lindorff-Larsen, Kresten

Rapid expansion of the protein disulfide isomerase gene family facilitates the folding of venom peptides 蛋白质二硫键异构酶基因家族的快速扩展促进了毒液肽的折叠

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2016-03-08

OAAI

Safavi-Hemami, Helena; Li, Qing; Jackson, Ronneshia L.; Song, Albert S.; Boomsma, Wouter; Bandyopadhyay, Pradip K.; Gruber, Christian W.; Purcell, Anthony W.; Yandell, Mark; Olivera, Baldomero M.; Ellgaard, Lars

What does Evolution Tell us about the Structure of a Functional Amyloid Protein?

BIOPHYSICAL JOURNAL

IF3.1

2015-01-01

OAAI

Tian, Pengfei; Boomsma, Wouter; Wang, Yong; Otzen, Daniel Erik; Jensen, Mogens Hogh; Lindorff-Larsen, Kresten

Structure of a Functional Amyloid Protein Subunit Computed Using Sequence Variation

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

IF15.6

2014-12-22

PREAI

Tian, Pengfei; Boomsma, Wouter; Wang, Yong; Otzen, Daniel E.; Jensen, Mogens H.; Lindorff-Larsen, Kresten

Equilibrium simulations of proteins using molecular fragment replacement and NMR chemical shifts

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2014-09-05

OAAI

Boomsma, Wouter; Tian, Pengfei; Frellsen, Jes; Ferkinghoff-Borg, Jesper; Hamelryck, Thomas; Lindorff-Larsen, Kresten; Vendruscolo, Michele

Probabilistic Determination of Native State Ensembles of Proteins

JOURNAL OF CHEMICAL THEORY AND COMPUTATION

IF5.5

2014-06-30

PREAI

Olsson, Simon; Voegeli, Beat Rolf; Cavalli, Andrea; Boomsma, Wouter; Ferkinghoff-Borg, Jesper; Lindorff-Larsen, Kresten; Hamelryck, Thomas

Robust Estimation of Diffusion-Optimized Ensembles for Enhanced Sampling

JOURNAL OF CHEMICAL THEORY AND COMPUTATION

IF5.5

2014-01-28

PREAI

Tian, Pengfei; Jonsson, Sigurdur AE.; Ferkinghoff-Borg, Jesper; Krivov, Sergi V.; Lindorff-Larsen, Kresten; Irback, Anders; Boomsma, Wouter

研究方向