Job Dekker - Publications, H-index & Citations

Job Dekker

University of Massachusetts Chan Medical School

96H指数

384论文数

7.2W被引数

收录论文 117

发表时间

Interphase chromosome conformation is specified by distinct folding programmes inherited through mitotic chromosomes or the cytoplasm 间期染色体的构象由通过有丝分裂染色体或细胞质遗传的特定折叠程序决定。

Nature Cell Biology

IF19.1

2025-12-22

OAAI

Allana Schooley; Sergey V. Venev; Vasilisa Aksenova; Jesse W. Lehman; Emily Navarrete; Athma A. Pai; Mary Dasso; Job Dekker

An integrated view of the structure and function of the human 4D nucleome 人类4D核体结构与功能的综合视图

Nature

IF48.5

2025-12-17

OAAI

Job Dekker; Betul Akgol Oksuz; Yang Zhang; Ye Wang; Miriam K. Minsk; Shuzhen Kuang; Liyan Yang; Johan H. Gibcus; Nils Krietenstein; Oliver J. Rando; Jie Xu; Derek H. Janssens; Steven Henikoff; Alexander Kukalev; Willemin Andréa; Warren Winick-Ng; Rieke Kempfer; Ana Pombo; Miao Yu; Pradeep Kumar; Liguo Zhang; Andrew S. Belmont; Takayo Sasaki; Tom van Schaik; Laura Brueckner; Daan Peric-Hupkes; Bas van Steensel; Ping Wang; Haoxi Chai; Minji Kim; Yijun Ruan; Ran Zhang; Sofia A. Quinodoz; Prashant Bhat; Mitchell Guttman; Wenxin Zhao; Shu Chien; Yuan Liu; Sergey V. Venev; Dariusz Plewczynski; Ibai Irastorza Azcarate; Dominik Szabó; Christoph J. Thieme; Teresa Szczepińska; Mateusz Chiliński; Kaustav Sengupta; Mattia Conte; Andrea Esposito; Alex Abraham; Ruochi Zhang; Yuchuan Wang; Xingzhao Wen; Qiuyang Wu; Yang Yang; Jie Liu; Lorenzo Boninsegna; Asli Yildirim; Yuxiang Zhan; Andrea Maria Chiariello; Simona Bianco; Lindsay Lee; Ming Hu; Yun Li; R. Jordan Barnett; Ashley L. Cook; Daniel J. Emerson; Claire Marchal; Peiyao Zhao; Peter J. Park; Burak H. Alver; Andrew J. Schroeder; Rahi Navelkar; Clara Bakker; William Ronchetti; Shannon Ehmsen; Alexander D. Veit; Nils Gehlenborg; Ting Wang; Daofeng Li; Xiaotao Wang; Mario Nicodemi; Bing Ren; Sheng Zhong; Jennifer E. Phillips-Cremins; David M. Gilbert; Katherine S. Pollard; Frank Alber; Jian Ma; William S. Noble; Feng Yue

mRNA initiation and termination are spatially coordinated mRNA的起始和终止在空间上是协调的

Science

IF45.8

2025-10-09

PREAI

Ezequiel Calvo-Roitberg; Christine L. Carroll; GyeungYun Kim; Valeria Sanabria; Sergey V. Venev; Steven T. Mick; Joseph D. Paquette; Maritere Uriostegui-Arcos; Job Dekker; Ana Fiszbein; Athma A. Pai

Mitotic chromosomes are self-entangled and disentangle through a topoisomerase-II-dependent two-stage exit from mitosis

MOLECULAR CELL

IF16.6

2024-04-01

OAAI

Hildebrand, Erica M.; Polovnikov, Kirill; Dekker, Bastiaan; Liu, Yu; Lafontaine, Denis L.; Fox, A. Nicole; Li, Ying; Venev, Sergey V.; Mirny, Leonid A.; Dekker, Job

Chromosome evolution screens recapitulate tissue-specific tumor aneuploidy patterns

NATURE GENETICS

IF31.8

2024-02-22

OAAI

Watson, Emma V.; Lee, Jake June-Koo; Gulhan, Doga C.; Melloni, Giorgio E. M.; Venev, Sergey V.; Magesh, Rayna Y.; Frederick, Abdulrazak; Chiba, Kunitoshi; Wooten, Eric C.; Naxerova, Kamila; Dekker, Job; Park, Peter J.; Elledge, Stephen J.

Revisiting chromatin packaging in mouse sperm

GENOME RESEARCH

IF5.5

2023-12-21

OAAI

Yin, Qiangzong; Yang, Chih-Hsiang; Strelkova, Olga S.; Wu, Jingyi; Sun, Yu; Gopalan, Sneha; Yang, Liyan; Dekker, Job; Fazzio, Thomas G.; Li, Xin Zhiguo; Gibcus, Johan; Rando, Oliver J.

Enhancer-driven 3D chromatin domain folding modulates transcription in human mammary tumor cells

LIFE SCIENCE ALLIANCE

IF2.9

2023-11-21

OAAI

Kocanova, Silvia; Raynal, Flavien; Goiffon, Isabelle; Oksuz, Betul Akgol; Bau, Davide; Kamgoue, Alain; Cantaloube, Sylvain; Zhan, Ye; Lajoie, Bryan; Marti-Renom, Marc A.; Dekker, Job; Bystricky, Kerstin

Editorial overview: Multiscale regulation of genome folding in space, time, and across the tree of life

CURRENT OPINION IN GENETICS & DEVELOPMENT

IF3.6

2023-10-01

PREAI

Cavalli, Giacomo; Dekker, Job

Multi-omics comparison of malignant and normal uveal melanocytes reveals molecular features of uveal melanoma

CELL REPORTS

IF6.9

2023-09-01

OAAI

Gentien, David; Saberi-Ansari, Elnaz; Servant, Nicolas; Jolly, Ariane; de la Grange, Pierre; Nemati, Fariba; Liot, Geraldine; Saule, Simon; Teissandier, Aurelie; Bourc'his, Deborah; Girard, Elodie; Wong, Jennifer; Masliah-Planchon, Julien; Narmanli, Erkan; Liu, Yuanlong; Torun, Emma; Goulancourt, Rebecca; Rodrigues, Manuel; Gaude, Laure Villoing; Reyes, Cecile; Bazire, Mateo; Chenegros, Thomas; Henry, Emilie; Rapinat, Audrey; Bohec, Mylene; Baulande, Sylvain; M'kacher, Radhia; Jeandidier, Eric; Nicolas, Andre; Ciriello, Giovanni; Margueron, Raphael; Decaudin, Didier; Cassoux, Nathalie; Piperno-Neumann, Sophie; Stern, Marc-Henri; Gibcus, Johan Harmen; Dekker, Job; Heard, Edith; Roman-Roman, Sergio; Waterfall, Joshua J.

Spatial and temporal organization of the genome Current state and future aims of the 4D nucleome project

MOLECULAR CELL

IF16.6

2023-08-01

OAAI

Dekker, Job; Alber, Frank; Aufmkolk, Sarah; Beliveau, Brian J.; Bruneau, Benoit G.; Belmont, Andrew S.; Bintu, Lacramioara; Boettiger, Alistair; Calandrelli, Riccardo; Disteche, Christine M.; Gilbert, David M.; Gregor, Thomas; Hansen, Anders S.; Huang, Bo; Huangfu, Danwei; Kalhor, Reza; Leslie, Christina S.; Li, Wenbo; Li, Yun; Ma, Jian; Noble, William S.; Park, Peter J.; Phillips-Cremins, Jennifer E.; Pollard, Katherine S.; Rafelski, Susanne M.; Ren, Bing; Ruan, Yijun; Shav-Tal, Yaron; Shen, Yin; Shendure, Jay; Shu, Xiaokun; Strambio-De-Castillia, Caterina; Vertii, Anastassiia; Zhang, Huaiying; Zhong, Sheng

Mechanisms of insertions at a DNA double-strand break DNA双链断裂的插入机制

MOLECULAR CELL

IF16.6

2023-07-01

OAAI

Min, Jaewon; Zhao, Junfei; Zagelbaum, Jennifer; Lee, Jina; Takahashi, Sho; Cummings, Portia; Schooley, Allana; Dekker, Job; Gottesman, Max E.; Rabadan, Raul; Gautier, Jean

Mitotic chromosomes scale to nuclear-cytoplasmic ratio and cell size in Xenopus

ELIFE

IF0

2023-04-25

OAAI

Zhou, Coral Y.; Dekker, Bastiaan; Liu, Ziyuan; Cabrera, Hilda; Ryan, Joel; Dekker, Job; Heald, Rebecca

Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization(vol 30, pg 99, 2023)

NATURE STRUCTURAL & MOLECULAR BIOLOGY

IF10.1

2023-04-14

OAAI

Zagelbaum, Jennifer; Schooley, Allana; Zhao, Junfei; Schrank, Benjamin R.; Callen, Elsa; Zha, Shan; Gottesman, Max E.; Nussenzweig, Andre; Rabadan, Raul; Dekker, Job; Gautier, Jean

Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization

NATURE STRUCTURAL & MOLECULAR BIOLOGY

IF10.1

2022-12-23

OAAI

Zagelbaum, Jennifer; Schooley, Allana; Zhao, Junfei; Schrank, Benjamin R.; Callen, Elsa; Zha, Shan; Gottesman, Max E.; Nussenzweig, Andre; Rabadan, Raul; Dekker, Job; Gautier, Jean

Diverse silent chromatin states modulate genome compartmentalization and loop extrusion barriers

NATURE STRUCTURAL & MOLECULAR BIOLOGY

IF10.1

2022-12-22

OAAI

Spracklin, George; Abdennur, Nezar; Imakaev, Maxim; Chowdhury, Neil; Pradhan, Sriharsa; Mirny, Leonid A. A.; Dekker, Job

A cohesin traffic pattern genetically linked to gene regulation

NATURE STRUCTURAL & MOLECULAR BIOLOGY

IF10.1

2022-12-08

OAAI

Valton, Anne-Laure; Venev, Sergey V.; Mair, Barbara; Khokhar, Eraj Shafiq; Tong, Amy H. Y.; Usaj, Matej; Chan, Katherine; Pai, Athma A.; Moffat, Jason; Dekker, Job

Regulation of the mitotic chromosome folding machines

BIOCHEMICAL JOURNAL

IF4.3

2022-10-21

OAAI

Dekker, Bastiaan; Dekker, Job

CTCF-CTCF loops and intra-TAD interactions show differential dependence on cohesin ring integrity

NATURE CELL BIOLOGY

IF19.1

2022-10-06

OAAI

Liu, Yu; Dekker, Job

Chromosome-Level Reference Genomes for Two Strains of Caenorhabditis briggsae: An Improved Platform for Comparative Genomics 两株briggsae的染色体水平参考基因组: 改进的比较基因组学平台

GENOME BIOLOGY AND EVOLUTION

IF2.8

2022-03-28

OAAI

Stevens, Lewis; Moya, Nicolas D.; Tanny, Robyn E.; Gibson, Sophia B.; Tracey, Alan; Na, Huimin; Chitrakar, Rojin; Dekker, Job; Walhout, Albertha J. M.; Baugh, L. Ryan; Andersen, Erik C.

Loops, topologically associating domains, compartments, and territories are elastic and robust to dramatic nuclear volume swelling

SCIENTIFIC REPORTS

IF3.9

2022-03-18

OAAI

Sanders, Jacob T.; Golloshi, Rosela; Das, Priyojit; Xu, Yang; Terry, Peyton H.; Nash, Darrian G.; Dekker, Job; McCord, Rachel Patton

研究方向