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Aggressive B cell lymphomas retain ATR-dependent determinants of T cell exclusion from the germinal center dark zone 弥漫大B细胞淋巴瘤保留ATR依赖性的生发中心暗区T细胞排斥决定因素 Cancila, Valeria; Bertolazzi, Giorgio; Chan, Allison S. Y.; Medico, Giovanni; Bastianello, Giulia; Morello, Gaia; Paysan, Daniel; Lai, Clemence; Hong, Liang; Shenoy, Girija; Jaynes, Patrick W.; Schiavoni, Giovanna; Mattei, Fabrizio; Piconese, Silvia; Revuelta, Maria V.; Noto, Francesco; Businaro, Luca; Ninno, Adele De; Cammarata, Ilenia; Pagni, Fabio; Venkatachalapathy, Saradha; Sangaletti, Sabina; Di Napoli, Arianna; Cicio, Giada; Vacca, Davide; Lonardi, Silvia; Lorenzi, Luisa; Ferreri, Andres J. M.; Belmonte, Beatrice; Liu, Min; Lakshmanan, Manikandan; Ong, Michelle S. N.; Zhang, Biyan; See, Tingyi; Lam, Kong-Peng; Varano, Gabriele; Colombo, Mario P.; Bicciato, Silvio; Inghirami, Giorgio; Cerchietti, Leandro; Ponzoni, Maurilio; Zappasodi, Roberta; Metzger, Evelyn; Beechem, Joseph; Facchetti, Fabio; Foiani, Marco; Casola, Stefano; Jeyasekharan, Anand D.; Tripodo, Claudio 分享 收藏
InSituCor: exploring spatially correlated genes conditional on the cell type landscape InSituCor: 探索以细胞类型为条件的空间相关基因 Danaher, Patrick; McGuire, Dan; Wu, Lidan; Patrick, Michael; Kroeppler, David; Zhai, Haiyan; Olgun, Deniz G.; Gong, Dennis; Cao, Jingyi; Hwang, William L.; Schmid, Joachim; Beechem, Joseph M. 分享 收藏
A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients 单核和空间转录组图谱揭示了COVID-19患者肝脏中的拓扑结构、功能及再生性器官损伤 Pita-Juarez, Yered; Karagkouni, Dimitra; Kalavros, Nikolaos; Melms, Johannes C.; Niezen, Sebastian; Delorey, Toni M.; Essene, Adam L.; Brook, Olga R.; Pant, Deepti; Skelton-Badlani, Disha; Naderi, Pourya; Huang, Pinzhu; Pan, Liuliu; Hether, Tyler; Andrews, Tallulah S.; Ziegler, Carly G. K.; Reeves, Jason; Myloserdnyy, Andriy; Chen, Rachel; Nam, Andy; Phelan, Stefan; Liang, Yan; Gregory, Mark; He, Shanshan; Patrick, Michael; Rane, Tushar; Wardhani, Aster; Amin, Amit Dipak; Biermann, Jana; Hibshoosh, Hanina; Veregge, Molly; Kramer, Zachary; Jacobs, Christopher; Yalcin, Yusuf; Phillips, Devan; Slyper, Michal; Subramanian, Ayshwarya; Ashenberg, Orr; Bloom-Ackermann, Zohar; Tran, Victoria M.; Gomez, James; Sturm, Alexander; Zhang, Shuting; Fleming, Stephen J.; Warren, Sarah; Beechem, Joseph; Hung, Deborah; Babadi, Mehrtash; Padera Jr, Robert F.; Macparland, Sonya A.; Bader, Gary D.; Imad, Nasser; Solomon, Isaac H.; Miller, Eric; Riedel, Stefan; Porter, Caroline B. M.; Villani, Alexandra-Chloe; Tsai, Linus T. -Y.; Hide, Winston; Szabo, Gyongyi; Hecht, Jonathan; Rozenblatt-Rosen, Orit; Shalek, Alex K.; Izar, Benjamin; Popov, Yury V.; Jiang, Z. Gordon; Vlachos, Ioannis S. 分享 收藏
Spatially resolved analysis of pancreatic cancer identifies therapy-associated remodeling of the tumor microenvironment 胰腺癌的空间分辨分析确定了肿瘤微环境的治疗相关重塑 Shiau, Carina; Cao, Jingyi; Gong, Dennis; Gregory, Mark T.; Caldwell, Nicholas J.; Yin, Xunqin; Cho, Jae-Won; Wang, Peter L.; Su, Jennifer; Wang, Steven; Reeves, Jason W.; Kim, Tae Kyung; Kim, Youngmi; Guo, Jimmy A.; Lester, Nicole A.; Bae, Jung Woo; Zhao, Ryan; Schurman, Nathan; Barth, Jamie L.; Ganci, Maria L.; Weissleder, Ralph; Jacks, Tyler; Qadan, Motaz; Hong, Theodore S.; Wo, Jennifer Y.; Roberts, Hannah; Beechem, Joseph M.; Fernandez-del Castillo, Carlos; Mino-Kenudson, Mari; Ting, David T.; Hemberg, Martin; Hwang, William L. 分享 收藏
A single-cell spatially resolved atlas of immune-mediated control of lung adenocarcinoma using 1,000-plex single-cell spatial molecular imaging in a transgenic mouse model Panciera, Tito; Zanconato, Francesca; Cordenonsi, Michelangelo; Forcato, Mattia; Vanni, Giada; Bicciato, Silvio; Preciado, Julian; Ilcisin, Saskia; Raay, Katrina V.; Hoang, Margaret; Patrick, Michael; He, Shanshan; Beechem, Joseph; Piccolo, Stefano 分享 收藏
Uncover spatial signatures of tumor microenvironment and oncogenic pathways using 6,000-plex single-cell spatial molecular imaging on FFPE skin squamous cell carcinoma Patrick, Michael; He, Shanshan; Ilcisin, Saskia; Kroeppler, David; Danaher, Patrick; Reeves, Jason; Gregory, Mark; Zhai, Haiyan; Rhodes, Michael; Beechem, Joseph 分享 收藏
A novel spatial multi-omic approach for biological discoveries in colonic diseased tissues using a comprehensive Immuno-Oncology Proteome Atlas and Whole Transcriptome Atlas Rosenbloom, Alyssa; Bonnett, Shilah; Conner, Mark; Kang, Christine; Piazza, Erin; Filanoski, Brian; Meredith, Rhonda; Yi, Hye Son; Hamanishi, Lori; Ignacio, Eduardo; Nelson, Nadine; Prater, Michael; Devgan, Vik; Van Eijsden, Rudy; Moon, Melanie; Isgur, Lesley; Theisen, Terence; Hoang, Margaret; Geiss, Gary; Beechem, Joseph M. 分享 收藏
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Spatial Atlas of Human Anatomy (SAHA): A subcellular, multiscale spatial odyssey of immune and gastrointestinal tissues and tumors Park, Jiwoon; Gregorio, Roberto; Hissong, Erika; Patel, Sanjay; Robinson, Brian; Socciarelli, Fabio; Metzger, Evenlyn; Liang, Yan; Reeves, Jason; Beechem, Joseph; Elemento, Olivier; Alonso, Alicia; Houlihan, Shauna; Schwartz, Robert; Mason, Christopher E. 分享 收藏
Deep spatial immunophenotyping of lymphoid aggregates in pancreatic cancer using multi-omic integration of ultra high-plex proteomics and transcriptomics Gong, Dennis; Cao, Jingyi; Wang, Peter; Jhaveri, Niyati; Hou, Yue; Cheikh, Bassem B.; Ji, HaYeun; Gregory, Mark; Reeves, Jason; Patrick, Michael; Shiau, Carina; Su, Jennifer; Guo, Jimmy A.; Beechem, Joseph M.; Hemberg, Martin; Hwang, William L.; Park, Ryan 分享 收藏
Spatially-constrained optimal transport interaction analysis reveals therapy-associated remodeling in the pancreatic cancer microenvironment Shiau, Carina; Cao, Jingyi; Gregory, Mark T.; Gong, Dennis; Yin, Xunqin; Cho, Jae-Won; Wang, Peter L.; Su, Jennifer; Wang, Steven; Reeves, Jason W.; Kim, Tae Kyung; Kim, Youngmi; Guo, Jimmy A.; Lester, Nicole A.; Barth, Jamie L.; Jacks, Tyler; Hong, Theodore S.; Beechem, Joseph M.; Fernandez-del Castillo, Carlos; Mino-Kenudson, Mari; Ting, David T.; Hemberg, Martin; Hwang, William L. 分享 收藏
Organ-specific immunity: A tissue analysis framework for investigating local immune responses to SARS-CoV-2 Ng, Alphonsus H. C.; Hu, Huiqian; Wang, Kai; Scherler, Kelsey; Warren, Sarah E.; Zollinger, Daniel R.; McKay-Fleisch, Jill; Sorg, Kristina; Beechem, Joseph M.; Ragaglia, Emily; Lacy, J. Matthew; Smith, Kelly D.; Marshall, Desiree A.; Bundesmann, Michael M.; de Castilla, Diego Lopez; Corwin, David; Yarid, Nicole; Knudsen, Beatrice S.; Lu, Yue; Goldman, Jason D.; Heath, James R. 分享 收藏
Multiplatform Analysis of Intratumoral PTEN Heterogeneity in Melanoma Chagani, Sharmeen; De Macedo, Mariana P.; Carapeto, Fernando; Wang, Feng; Marzese, Diego M.; Wani, Khalida; Haydu, Lauren E.; Peng, Weiyi; Ong, Giang T.; Warren, Sarah E.; Beechem, Joseph M.; Hoon, Dave S. B.; Mills, Gordon B.; Tetzlaff, Michael T.; Lazar, Alexander J.; Kwong, Lawrence N.; Davies, Michael A. 分享 收藏
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Distinct cancer-intrinsic mechanisms mediate nerve recruitment/outgrowth versus perineural invasion Hwang, William L.; Su, Jennifer; Shiau, Carina; Wang, Peter L.; Guo, Jimmy A.; Lester, Nicole A.; Barth, Jaimie L.; Hoffman, Hannah I.; Divakar, Prajan; Reeves, Jason W.; Miller, Eric; Beechem, Joseph M.; Aguirre, Andrew J.; Zheng, Lei; Ting, David T.; Mino-Kenudson, Mari; Jacks, Tyler 分享 收藏
Spatial whole transcriptome profiling of human normal liver and HCC uncovers unique insights into metabolic zonation Liang, Yan; Wang, Nan; Li, Xia; Ton, Kathy; Zhang, Liang; Vandenberg, Megan; Glaser, Charlie; Ding, Zhiyong; Beechem, Joseph; Nam, Andy; Liang, Yan 分享 收藏
Spatial insights into tumor immune evasion illuminated with 1000-plex RNA profiling with CosMx Spatial Molecular Imager Williams, Claire; Reeves, Jason W.; Danaher, Patrick; He, Shanshan; Kim, Sean; Patrick, Michael; Preciado, Julian; Gregory, Mark; Reitz, Zach; Jenkins, Justin; Liu, Rachel; Murphy, Sarah; Kang, Christine; Hartman, Byron; Devgan, Vikram; Rhodes, Michael; Beechem, Joseph 分享 收藏
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