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AlphaPept: a modern and open framework for MS-based proteomics AlphaPept: 基于MS的蛋白质组学的现代开放框架 Strauss, Maximilian T.; Bludau, Isabell; Zeng, Wen-Feng; Voytik, Eugenia; Ammar, Constantin; Schessner, Julia P.; Ilango, Rajesh; Gill, Michelle; Meier, Florian; Willems, Sander; Mann, Matthias 分享 收藏
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Robust dimethyl-based multiplex-DIA doubles single-cell proteome depth via a reference channel 强大的基于二甲基的多重DIA通过参考通道使单细胞蛋白质组深度加倍 Thielert, Marvin; Itang, Ericka C. M.; Ammar, Constantin; Rosenberger, Florian A.; Bludau, Isabell; Schweizer, Lisa; Nordmann, Thierry M.; Skowronek, Patricia; Wahle, Maria; Zeng, Wen-Feng; Zhou, Xie-Xuan; Brunner, Andreas-David; Richter, Sabrina; Levesque, Mitchell P.; Theis, Fabian J.; Steger, Martin; Mann, Matthias 分享 收藏
Rapid Profiling of Protein Complex Reorganization in Perturbed Systems 扰动系统中蛋白质复合物重组的快速分析 Bludau, Isabell; Nicod, Charlotte; Martelli, Claudia; Xue, Peng; Heusel, Moritz; Fossati, Andrea; Uliana, Federico; Frommelt, Fabian; Aebersold, Ruedi; Collins, Ben C. 分享 收藏
Toward an Integrated Machine Learning Model of a Proteomics Experiment Neely, Benjamin A.; Dorfer, Viktoria; Martens, Lennart; Bludau, Isabell; Bouwmeester, Robbin; Degroeve, Sven; Deutsch, Eric W.; Gessulat, Siegfried; Kaell, Lukas; Palczynski, Pawel; Payne, Samuel H.; Rehfeldt, Tobias Greisager; Schmidt, Tobias; Schwaemmle, Veit; Uszkoreit, Julian; Vizcaino, Juan Antonio; Wilhelm, Mathias; Palmblad, Magnus 分享 收藏
Native Size-Exclusion Chromatography-Based Mass Spectrometry Reveals New Components of the Early Heat Shock Protein 90 Inhibition Response Among Limited Global Changes Samant, Rahul S.; Batista, Silvia; Larance, Mark; Ozer, Bugra; Milton, Christopher I.; Bludau, Isabell; Wu, Estelle; Biggins, Laura; Andrews, Simon; Hervieu, Alexia; Johnston, Harvey E.; Al-Lazikhani, Bissan; Lamond, Angus I.; Clarke, Paul A.; Workman, Paul 分享 收藏
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The impact of genomic variation on protein phosphorylation states and regulatory networks Grossbach, Jan; Gillet, Ludovic; Clement-Ziza, Mathieu; Schmalohr, Corinna L.; Schubert, Olga T.; Schuetter, Maximilian; Mawer, Julia S. P.; Barnes, Christopher A.; Bludau, Isabell; Weith, Matthias; Tessarz, Peter; Graef, Martin; Aebersold, Ruedi; Beyer, Andreas 分享 收藏
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Systematic detection of functional proteoform groups from bottom-up proteomic datasets Bludau, Isabell; Frank, Max; Doerig, Christian; Cai, Yujia; Heusel, Moritz; Rosenberger, George; Picotti, Paola; Collins, Ben C.; Rost, Hannes; Aebersold, Ruedi 分享 收藏
PCprophet: a framework for protein complex prediction and differential analysis using proteomic data Fossati, Andrea; Li, Chen; Uliana, Federico; Wendt, Fabian; Frommelt, Fabian; Sykacek, Peter; Heusel, Moritz; Hallal, Mahmoud; Bludau, Isabell; Capraz, Tumay; Xue, Peng; Song, Jiangning; Wollscheid, Bernd; Purcell, Anthony W.; Gstaiger, Matthias; Aebersold, Ruedi 分享 收藏
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SECAT: Quantifying Protein Complex Dynamics across Cell States by Network-Centric Analysis of SEC-SWATH-MS Profiles Rosenberger, George; Heusel, Moritz; Bludau, Isabell; Collins, Ben C.; Martelli, Claudia; Williams, Evan G.; Xue, Peng; Liu, Yansheng; Aebersold, Ruedi; Califano, Andrea 分享 收藏
Integrative proteomics reveals principles of dynamic phosphosignaling networks in human erythropoiesis Karayel, Oezge; Xu, Peng; Bludau, Isabell; Bhoopalan, Senthil Velan; Yao, Yu; Rita, Freitas Colaco Ana; Santos, Alberto; Schulman, Brenda A.; Alpi, Arno F.; Weiss, Mitchell J.; Mann, Matthias 分享 收藏
diaPASEF: parallel accumulation-serial fragmentation combined with data-independent acquisition Meier, Florian; Brunner, Andreas-David; Frank, Max; Ha, Annie; Bludau, Isabell; Voytik, Eugenia; Kaspar-Schoenefeld, Stephanie; Lubeck, Markus; Raether, Oliver; Bache, Nicolai; Aebersold, Ruedi; Collins, Ben C.; Rost, Hannes L.; Mann, Matthias 分享 收藏
Complex-centric proteome profiling by SEC-SWATH-MS for the parallel detection of hundreds of protein complexes Bludau, Isabell; Heusel, Moritz; Frank, Max; Rosenberger, George; Hafen, Robin; Banaei-Esfahani, Amir; van Drogen, Audrey; Collins, Ben C.; Gstaiger, Matthias; Aebersold, Ruedi 分享 收藏
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