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收藏分享 收藏 High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations (vol 11, 736, 2020)1220癌症的高覆盖率全基因组分析揭示了数百个由重排介导的顺式调节改变解除调节的基因 (第11卷，736，2020)
Zhang, Yiqun; Chen, Fengju; Fonseca, Nuno A.; He, Yao; Fujita, Masashi; Nakagawa, Hidewaki; Zhang, Zemin; Brazma, Alvis; Creighton, Chad J. 分享 收藏 Tumour gene expression signature in primary melanoma predicts long-term outcomes (vol 12, 1137, 2021)原发性黑色素瘤中的肿瘤基因表达特征预测长期结果 (第12卷，1137，2021)Garg, Manik; Couturier, Dominique-Laurent; Nsengimana, Jeremie; Fonseca, Nuno A.; Wongchenko, Matthew; Yan, Yibing; Lauss, Martin; Jonsson, Goran B.; Newton-Bishop, Julia; Parkinson, Christine; Middleton, Mark R.; Bishop, D. Timothy; McDonald, Sarah; Stefanos, Nikki; Tadross, John; Vergara, Ismael A.; Lo, Serigne; Newell, Felicity; Wilmott, James S.; Thompson, John F.; Long, Georgina V.; Scolyer, Richard A.; Corrie, Pippa; Adams, David J.; Brazma, Alvis; Rabbie, Roy 分享 收藏 分享 收藏 分享 收藏 Tumour gene expression signature in primary melanoma predicts long-term outcomes原发性黑色素瘤的肿瘤基因表达特征预测长期结果Garg, Manik; Couturier, Dominique-Laurent; Nsengimana, Jeremie; Fonseca, Nuno A.; Wongchenko, Matthew; Yan, Yibing; Lauss, Martin; Jonsson, Goeran B.; Newton-Bishop, Julia; Parkinson, Christine; Middleton, Mark R.; Bishop, D. Timothy; McDonald, Sarah; Stefanos, Nikki; Tadross, John; Vergara, Ismael A.; Lo, Serigne; Newell, Felicity; Wilmott, James S.; Thompson, John F.; Long, Georgina V.; Scolyer, Richard A.; Corrie, Pippa; Adams, David J.; Brazma, Alvis; Rabbie, Roy 分享 收藏 Shedding Light on the African Enigma: In Vitro Testing of Homo sapiens-Helicobacter pylori CoevolutionCavadas, Bruno; Leite, Marina; Pedro, Nicole; Magalhaes, Ana C.; Melo, Joana; Correia, Marcelo; Maximo, Valdemar; Camacho, Rui; Fonseca, Nuno A.; Figueiredo, Ceu; Pereira, Luisa 分享 收藏 分享 收藏 Tumors induce de novo steroid biosynthesis in T cells to evade immunityMahata, Bidesh; Pramanik, Jhuma; van der Weyden, Louise; Polanski, Krzysztof; Kar, Gozde; Riedel, Angela; Chen, Xi; Fonseca, Nuno A.; Kundu, Kousik; Campos, Lia S.; Ryder, Edward; Duddy, Graham; Walczak, Izabela; Okkenhaug, Klaus; Adams, David J.; Shields, Jacqueline D.; Teichmann, Sarah A. 分享 收藏 An RNA-seq Based Machine Learning Approach Identifies Latent Tuberculosis Patients With an Active Tuberculosis ProfileEstevez, Olivia; Anibarro, Luis; Garet, Elina; Pallares, Angeles; Barcia, Laura; Calvino, Laura; Maueia, Cremildo; Mussa, Tufaria; Fdez-Riverola, Florentino; Glez-Pena, Daniel; Reboiro-Jato, Miguel; Lopez-Fernandez, Hugo; Fonseca, Nuno A.; Reljic, Rajko; Gonzalez-Fernandez, Africa 分享 收藏 A user guide for the online exploration and visualization of PCAWG dataGoldman, Mary J.; Zhang, Junjun; Fonseca, Nuno A.; Cortes-Ciriano, Isidro; Xiang, Qian; Craft, Brian; Pineiro-Yanez, Elena; O'Connor, Brian D.; Bazant, Wojciech; Barrera, Elisabet; Munoz-Pomer, Alfonso; Petryszak, Robert; Fuellgrabe, Anja; Al-Shahrour, Fatima; Keays, Maria; Haussler, David; Weinstein, John N.; Huber, Wolfgang; Valencia, Alfonso; Park, Peter J.; Papatheodorou, Irene; Zhu, Jingchun; Ferretti, Vincent; Vazquez, Miguel 分享 收藏 Butler enables rapid cloud-based analysis of thousands of human genomes (vol 79, pg 134, 2019)Yakneen, Sergei; Waszak, Sebastian M.; Gertz, Michael; Korbel, Jan O.; Aminou, Brice; Bartolome, Javier; Boroevich, Keith A.; Boyce, Rich; Brooks, Angela N.; Buchanan, Alex; Buchhalter, Ivo; Butler, Adam P.; Byrne, Niall J.; Cafferkey, Andy; Campbell, Peter J.; Chen, Zhaohong; Cho, Sunghoon; Choi, Wan; Clapham, Peter; Davis-Dusenbery, Brandi N.; De La Vega, Francisco M.; Demeulemeester, Jonas; Dow, Michelle T.; Dursi, Lewis Jonathan; Eils, Juergen; Eils, Roland; Ellrott, Kyle; Farcas, Claudiu; Favero, Francesco; Fayzullaev, Nodirjon; Ferretti, Vincent; Flicek, Paul; Fonseca, Nuno A.; Gelpi, Josep Ll.; Getz, Gad; Gibson, Bob; Grossman, Robert L.; Harismendy, Olivier; Heath, Allison P.; Heinold, Michael C.; Hess, Julian M.; Hofmann, Oliver; Hong, Jongwhi H.; Hudson, Thomas J.; Hutter, Barbara; Hutter, Carolyn M.; Hubschmann, Daniel; Imoto, Seiya; Ivkovic, Sinisa; Jeon, Seung-Hyup; Jiao, Wei; Jung, Jongsun; Kabbe, Rolf; Kahles, Andre; Kerssemakers, Jules N. A.; Kim, Hyung-Lae; Kim, Hyunghwan; Kim, Jihoon; Kim, Youngwook; Kleinheinz, Kortine; Koscher, Michael; Koures, Antonios; Kovacevic, Milena; Lawerenz, Chris; Leshchiner, Ignaty; Liu, Jia; Livitz, Dimitri; Mihaiescu, George L.; Mijalkovic, Sanja; Lazic, Ana Mijalkovic; Miyano, Satoru; Miyoshi, Naoki; Nahal-Bose, Hardeep K.; Nakagawa, Hidewaki; Nastic, Mia; Newhouse, Steven J.; Nicholson, Jonathan; O'Connor, Brian D.; Ocana, David; Ohi, Kazuhiro; Ohno-Machado, Lucila; Omberg, Larsson; Ouellette, B. F. Francis; Paramasivam, Nagarajan; Perry, Marc D.; Pihl, Todd D.; Prinz, Manuel; Puiggros, Montserrat; Radovic, Petar; Raine, Keiran M.; Rheinbay, Esther; Rosenberg, Mara; Royo, Romina; Ratsch, Gunnar; Saksena, Gordon; Schlesner, Matthias; Shorser, Solomon I.; Short, Charles; Sofia, Heidi J.; Spring, Jonathan; Stein, Lincoln D.; Struck, Adam J.; Tiao, Grace; Tijanic, Nebojsa; Torrents, David; Van Loo, Peter; Vazquez, Miguel; Vicente, David; Wala, Jeremiah A.; Wang, Zhining; Waszak, Sebastian M.; Weischenfeldt, Joachim; Werner, Johannes; Williams, Ashley; Woo, Youngchoon; Wright, Adam J.; Xiang, Qian; Yang, Liming; Yuen, Denis; Yung, Christina K.; Zhang, Junjun; Korbel, Jan O. 分享 收藏 Butler enables rapid cloud-based analysis of thousands of human genomesButler能够对成千上万的人类基因组进行基于云的快速分析Yakneen, Sergei; Waszak, Sebastian M.; Gertz, Michael; Korbel, Jan O.; Aminou, Brice; Bartolome, Javier; Boroevich, Keith A.; Boyce, Rich; Brooks, Angela N.; Buchanan, Alex; Buchhalter, Ivo; Butler, Adam P.; Byrne, Niall J.; Cafferkey, Andy; Campbell, Peter J.; Chen, Zhaohong; Cho, Sunghoon; Choi, Wan; Clapham, Peter; Davis-Dusenbery, Brandi N.; De La Vega, Francisco M.; Demeulemeester, Jonas; Dow, Michelle T.; Dursi, Lewis Jonathan; Eils, Juergen; Eils, Roland; Ellrott, Kyle; Farcas, Claudiu; Favero, Francesco; Fayzullaev, Nodirjon; Ferretti, Vincent; Flicek, Paul; Fonseca, Nuno A.; Gelpi, Josep Ll; Getz, Gad; Gibson, Bob; Grossman, Robert L.; Harismendy, Olivier; Heath, Allison P.; Heinold, Michael C.; Hess, Julian M.; Hofmann, Oliver; Hong, Jongwhi H.; Hudson, Thomas J.; Hutter, Barbara; Hutter, Carolyn M.; Huebschmann, Daniel; Imoto, Seiya; Ivkovic, Sinisa; Jeon, Seung-Hyup; Jiao, Wei; Jung, Jongsun; Kabbe, Rolf; Kahles, Andre; Kerssemakers, Jules N. A.; Kim, Hyung-Lae; Kim, Hyunghwan; Kim, Jihoon; Kim, Youngwook; Kleinheinz, Kortine; Koscher, Michael; Koures, Antonios; Kovacevic, Milena; Lawerenz, Chris; Leshchiner, Ignaty; Liu, Jia; Livitz, Dimitri; Mihaiescu, George L.; Mijalkovic, Sanja; Lazic, Ana Mijalkovic; Miyano, Satoru; Miyoshi, Naoki; Nahal-Bose, Hardeep K.; Nakagawa, Hidewaki; Nastic, Mia; Newhouse, Steven J.; Nicholson, Jonathan; O'Connor, Brian D.; Ocana, David; Ohi, Kazuhiro; Ohno-Machado, Lucila; Omberg, Larsson; Ouellette, B. F. Francis; Paramasivam, Nagarajan; Perry, Marc D.; Pihl, Todd D.; Prinz, Manuel; Puiggros, Montserrat; Radovic, Petar; Raine, Keiran M.; Rheinbay, Esther; Rosenberg, Mara; Royo, Romina; Raetsch, Gunnar; Saksena, Gordon; Schlesner, Matthias; Shorser, Solomon, I; Short, Charles; Sofia, Heidi J.; Spring, Jonathan; Stein, Lincoln D.; Struck, Adam J.; Tiao, Grace; Tijanic, Nebojsa; Torrents, David; Van Loo, Peter; Vazquez, Miguel; Vicente, David; Wala, Jeremiah A.; Wang, Zhining; Weischenfeldt, Joachim; Werner, Johannes; Williams, Ashley; Woo, Youngchoon; Wright, Adam J.; Xiang, Qian; Yang, Liming; Yuen, Denis; Yung, Christina K.; Zhang, Junjun 分享 收藏 Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis癌症LncRNA普查揭示了长非编码rna在肿瘤发生中的深度功能保守性的证据Carlevaro-Fita, Joana; Lanzos, Andres; Feuerbach, Lars; Hong, Chen; Mas-Ponte, David; Pedersen, Jakob Skou; Johnson, Rory; Abascal, Federico; Amin, Samirkumar B.; Bader, Gary D.; Barenboim, Jonathan; Beroukhim, Rameen; Bertl, Johanna; Boroevich, Keith A.; Brunak, Soren; Campbell, Peter J.; Carlevaro-Fita, Joana; Chakravarty, Dimple; Chan, Calvin Wing Yiu; Chen, Ken; Choi, Jung Kyoon; Deu-Pons, Jordi; Dhingra, Priyanka; Diamanti, Klev; Feuerbach, Lars; Fink, J. Lynn; Fonseca, Nuno A.; Frigola, Joan; Gambacorti-Passerini, Carlo; Garsed, Dale W.; Gerstein, Mark; Getz, Gad; Gonzalez-Perez, Abel; Guo, Qianyun; Gut, Ivo G.; Haan, David; Hamilton, Mark P.; Haradhvala, Nicholas J.; Harmanci, Arif O.; Helmy, Mohamed; Herrmann, Carl; Hess, Julian M.; Hobolth, Asger; Hodzic, Ermin; Hong, Chen; Hornshoj, Henrik; Isaev, Keren; Izarzugaza, Jose M. G.; Johnson, Todd A.; Juul, Malene; Juul, Randi Istrup; Kahles, Andre; Kahraman, Abdullah; Kellis, Manolis; Khurana, Ekta; Kim, Jaegil; Kim, Jong K.; Kim, Youngwook; Komorowski, Jan; Korbel, Jan O.; Kumar, Sushant; Lanzos, Andres; Larsson, Erik; Lawrence, Michael S.; Lee, Donghoon; Lehmann, Kjong-Van; Li, Shantao; Li, Xiaotong; Lin, Ziao; Liu, Eric Minwei; Lochovsky, Lucas; Lou, Shaoke; Madsen, Tobias; Marchal, Kathleen; Martincorena, Inigo; Martinez-Fundichely, Alexander; Maruvka, Yosef E.; McGillivray, Patrick D.; Meyerson, William; Muinos, Ferran; Mularoni, Loris; Nakagawa, Hidewaki; Nielsen, Morten Muhlig; Paczkowska, Marta; Park, Keunchil; Park, Kiejung; Pedersen, Jakob Skou; Pich, Oriol; Pons, Tirso; Pulido-Tamayo, Sergio; Raphael, Benjamin J.; Reimand, Juri; Reyes-Salazar, Iker; Reyna, Matthew A.; Rheinbay, Esther; Rubin, Mark A.; Rubio-Perez, Carlota; Sabarinathan, Radhakrishnan; Sahinalp, S. Cenk; Saksena, Gordon; Salichos, Leonidas; Sander, Chris; Schumacher, Steven E.; Shackleton, Mark; Shapira, Ofer; Shen, Ciyue; Shrestha, Raunak; Shuai, Shimin; Sidiropoulos, Nikos; Sieverling, Lina; Sinnott-Armstrong, Nasa; Stein, Lincoln D.; Stuart, Joshua M.; Tamborero, David; Tiao, Grace; Tsunoda, Tatsuhiko; Umer, Husen M.; Uuskula-Reimand, Liis; Valencia, Alfonso; Vazquez, Miguel; Verbeke, Lieven P. C.; Wadelius, Claes; Wadi, Lina; Wang, Jiayin; Warrell, Jonathan; Waszak, Sebastian M.; Weischenfeldt, Joachim; Wheeler, David A.; Wu, Guanming; Yu, Jun; Zhang, Jing; Zhang, Xuanping; Zhang, Yan; Zhao, Zhongming; Zou, Lihua; von Mering, Christian 分享 收藏 分享 收藏 Expression Atlas update: from tissues to single cellsPapatheodorou, Irene; Moreno, Pablo; Manning, Jonathan; Fuentes, Alfonso Munoz-Pomer; George, Nancy; Fexova, Silvie; Fonseca, Nuno A.; Fullgrabe, Anja; Green, Matthew; Huang, Ni; Huerta, Laura; Lqbal, Haider; Jianu, Monica; Mohammed, Suhaib; Zhao, Lingyun; Jarnuczak, Andrew F.; Jupp, Simon; Marioni, John; Meyer, Kerstin; Petryszak, Robert; Medina, Cesar Augusto Prada; Talavera-Lopez, Carlos; Teichmann, Sarah; Vizcaino, Juan Antonio; Brazma, Alvis 分享 收藏 In vivo targeting of mesothelioma's molecular signature with nanoparticle functionalized with nucleolin-binding peptideFonseca, Nuno A.; Moura, Vera; Colelli, Fabiana; Pesce, Daniela; Signorino, Giacomo; Focareta, Laura; Fucci, Alessandra; Cardile, Francesco; Pisano, Claudio; Simoes, Sergio; Moreira, Joao Nuno 分享 收藏 ArrayExpress update - from bulk to single-cell expression dataAthar, Awais; Fullgrabe, Anja; George, Nancy; Iqbal, Haider; Huerta, Laura; Ali, Ahmed; Snow, Catherine; Fonseca, Nuno A.; Petryszak, Robert; Papatheodorou, Irene; Sarkans, Ugis; Brazma, Alvis 分享 收藏 Transcription Factor Activities Enhance Markers of Drug Sensitivity in CancerGarcia-Alonso, Luz; Iorio, Francesco; Matchan, Angela; Fonseca, Nuno; Jaaks, Patricia; Peat, Gareth; Pignatelli, Miguel; Falcone, Fiammetta; Benes, Cyril H.; Dunham, Ian; Bignell, Graham; McDade, Simon S.; Garnett, Mathew J.; Saez-Rodriguez, Julio 分享 收藏 
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