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JUNB O-GlcNAcylation-Mediated Promoter Accessibility of Metabolic Genes Modulates Distinct Epithelial Lineage in Pulmonary Fibrosis JUNB o-glcnacylation介导的代谢基因启动子可及性调节肺纤维化中不同的上皮谱系 Bammert, Marie-Therese; Ansari, Meshal; Haag, Leoni; Ahmad, Zuhdi; Schroeder, Victoria; Birch, Joseph; Santacruz, Diana; Rust, Werner; Viollet, Coralie; Strobel, Benjamin; Dick, Alec; Gantner, Florian; Schlueter, Holger; Ramirez, Fidel; Lize, Muriel; Thomas, Matthew J.; Le, Huy Q. 分享 收藏
Spatial transcriptomic characterization of pathologic niches in IPF Mayr, Christoph H.; Santacruz, Diana; Jarosch, Sebastian; Bleck, Marina; Dalton, John; McNabola, Angela; Lempp, Charlotte; Neubert, Lavinia; Rath, Berenice; Kamp, Jan C.; Jonigk, Danny; Kuehnel, Mark; Schlueter, Holger; Klimowicz, Alexander; Doerr, Jonas; Dick, Alec; Ramirez, Fidel; Thomas, Matthew J. 分享 收藏
Transcriptomic and Proteomic Changes Driving Pulmonary Fibrosis Resolution in Young and Old Mice Weckerle, Jelena; Mayr, Christoph H.; Fundel-Clemens, Katrin; Laemmle, Barbel; Boryn, Lukasz; Thomas, Matthew J.; Bretschneider, Tom; Luippold, Andreas H.; Huber, Heinrich J.; Viollet, Coralie; Rist, Wolfgang; Veyel, Daniel; Ramirez, Fidel; Klee, Stephan; Kastle, Marc 分享 收藏
The scverse project provides a computational ecosystem for single-cell omics data analysis scverse项目为单细胞组学数据分析提供了一个计算生态系统 Virshup, Isaac; Bredikhin, Danila; Heumos, Lukas; Palla, Giovanni; Sturm, Gregor; Gayoso, Adam; Kats, Ilia; Koutrouli, Mikaela; Berger, Bonnie; Pe'er, Dana; Regev, Aviv; Teichmann, Sarah; Finotello, Francesca; Wolf, F. Alexander; Yosef, Nir; Stegle, Oliver; Theis, Fabian; Angerer, Philipp; Bergen, Volker; Boyeau, Pierre D.; Buettner, Maren; Eraslan, Gokcen; Fischer, David; Frank, Max C.; Hong, Justin; Klein, Michal; Lange, Marius; Lopez, Romain; Lotfollahi, Mohammad; Luecken, Malte; Ramirez, Fidel A.; Regier, Jeffrey; Rybakov, Sergei; Schaar, Anna; Valiollah Pour Amiri, Valeh; Weiler, Philipp J.; Xing, Galen 分享 收藏
Antifibrotic Drug Nintedanib Inhibits CSF1R to Promote IL-4-associated Tissue Repair Macrophages Watson, Carolin K.; Schloesser, Daniela; Fundel-Clemens, Katrin; Lerner, Carmen; Gabler, Svenja; Baskaran, Praveen; Wohnhaas, Christian T.; Dichtl, Stefanie; Huber, Heinrich J.; Ask, Kjetil; Gantner, Florian; Viollet, Coralie; Thomas, Matthew J.; Ramirez, Fidel; Murray, Peter J.; El Kasmi, Karim C. 分享 收藏
CD206+tumor-associated macrophages cross-present tumor antigen and drive antitumor immunity Modak, Madhura; Mattes, Ann-Kathrin; Reiss, Daniela; Skronska-Wasek, Wioletta; Langlois, Rebecca; Sabarth, Nicolas; Konopitzky, Renate; Ramirez, Fidel; Lehr, Katharina; Mayr, Tobias; Kind, David; Viollet, Coralie; Swee, Lee Kim; Petschenka, Jutta; El Kasmi, Karim C.; Noessner, Elfriede; Kitt, Kerstin; Pflanz, Stefan 分享 收藏
LSC-2021-The Anti-Fibrotic Drug Nintedanib Promotes Repair Macrophages Carolin, Koss; Fundel-Clemens, Katrin; Schloesser, Daniela; Lerner, Carmen; Frey, Silvia; Wohnhaas, Christian T.; Viollet, Coralie; Dichtl, Stefanie; Tilp, Cornelia; Thomas, Matthew J.; Gantner, Florian; Skronska-Wasek, Wioletta; Huber, Heinrich J.; Murray, Peter J.; Ramirez, Fidel; El Kasmi, Karim C. 分享 收藏
A single-cell RNA-sequencing training and analysis suite using the Galaxy framework Tekman, Mehmet; Batut, Berenice; Ostrovsky, Alexander; Antoniewski, Christophe; Clements, Dave; Ramirez, Fidel; Etherington, Graham J.; Hotz, Hans-Rudolf; Scholtalbers, Jelle; Manning, Jonathan R.; Bellenger, Lea; Doyle, Maria A.; Heydarian, Mohammad; Huang, Ni; Soranzo, Nicola; Moreno, Pablo; Mautner, Stefan; Papatheodorou, Irene; Nekrutenko, Anton; Taylor, James; Blankenberg, Daniel; Backofen, Rolf; Gruening, Bjoern 分享 收藏
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RELACS nuclei barcoding enables high-throughput ChIP-seq Arrigoni, Laura; Al-Hasani, Hoor; Ramirez, Fidel; Panzeri, Ilaria; Ryan, Devon Patrick; Santacruz, Diana; Kress, Nadia; Pospisilik, John Andrew; Boenisch, Ulrike; Manke, Thomas 分享 收藏
A comprehensive analysis of 195 DNA methylomes reveals shared and cell-specific features of partially methylated domains 对195 DNA甲基化组的全面分析揭示了部分甲基化结构域的共享和细胞特异性特征 Salhab, Abdulrahman; Nordstroem, Karl; Gasparoni, Gilles; Kattler, Kathrin; Ebert, Peter; Ramirez, Fidel; Arrigoni, Laura; Mueller, Fabian; Polansky, Julia K.; Cadenas, Cristina; Hengstler, Jan G.; Lengauer, Thomas; Manke, Thomas; Walter, Joern 分享 收藏
GOATOOLS: A Python library for Gene Ontology analyses GOATOOLS: 用于基因本体论分析的Python库 Klopfenstein, D. V.; Zhang, Liangsheng; Pedersen, Brent S.; Ramirez, Fidel; Vesztrocy, Alex Warwick; Naldi, Aurelien; Mungall, Christopher J.; Yunes, Jeffrey M.; Botvinnik, Olga; Weigel, Mark; Dampier, Will; Dessimoz, Christophe; Flick, Patrick; Tang, Haibao 分享 收藏
Galaxy HiCExplorer: a web server for reproducible Hi-C data analysis, quality control and visualization Galaxy HiCExplorer: 用于可重复的hi-c数据分析，质量控制和可视化的web服务器 Wolff, Joachim; Bhardwaj, Vivek; Nothjunge, Stephan; Richard, Gautier; Renschler, Gina; Gilsbach, Raif; Manke, Thomas; Backofen, Roif; Ramirez, Fidel; Gruening, Bjorn A. 分享 收藏
Community-Driven Data Analysis Training for Biology Batut, Berenice; Hiltemann, Saskia; Bagnacani, Andrea; Baker, Dannon; Bhardwaj, Vivek; Blank, Clemens; Bretaudeau, Anthony; Brillet-Gueguen, Loraine; Cech, Martin; Chilton, John; Clements, Dave; Doppelt-Azeroual, Olivia; Erxleben, Anika; Freeberg, Mallory Ann; Gladman, Simon; Hoogstrate, Youri; Hotz, Hans-Rudolf; Houwaart, Torsten; Jagtap, Pratik; Lariviere, Delphine; Le Corguille, Gildas; Manke, Thomas; Mareuil, Fabien; Ramirez, Fidel; Ryan, Devon; Sigloch, Florian Christoph; Soranzo, Nicola; Wolff, Joachim; Videm, Pavankumar; Wolfien, Markus; Wubuli, Aisanjiang; Yusuf, Dilmurat; Taylor, James; Backofen, Rolf; Nekrutenko, Anton; Gruening, Bjoern 分享 收藏
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Functional interplay between MSL1 and CDK7 controls RNA polymerase II Ser5 phosphorylation Chlamydas, Sarantis; Holz, Herbert; Samata, Maria; Chelmicki, Tomasz; Georgiev, Plamen; Pelechano, Vicent; Dundar, Friederike; Dasmeh, Pouria; Mittler, Gerhard; Cadete, Filipe Tavares; Ramirez, Fidel; Conrad, Thomas; Wei, Wu; Raja, Sunil; Manke, Thomas; Luscombe, Nicholas M.; Steinmetz, Lars M.; Akhtar, Asifa 分享 收藏
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High-Affinity Sites Form an Interaction Network to Facilitate Spreading of the MSL Complex across the X Chromosome in Drosophila Ramirez, Fidel; Lingg, Thomas; Toscano, Sarah; Lam, Kin Chung; Georgiev, Plamen; Chung, Ho-Ryun; Lajoie, Bryan R.; de Wit, Elzo; Zhan, Ye; de Laat, Wouter; Dekker, Job; Manke, Thomas; Akhtar, Asifa 分享 收藏
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