Midhat S. Farooqi - Publications, H-index & Citations

Midhat S. Farooqi

University of Missouri

16H指数

97论文数

1.4K被引数

收录论文 31

发表时间

MicroRNA Profiling Identifies Diagnostic and Prognostic Markers in Pediatric Sarcoma MicroRNA表达谱分析识别儿科肉瘤中的诊断和预后标志物

Cancers 2025, Vol. 17, Page 3791

IF4.4

2025-11-27

OAAI

Terrie G. Flatt; Leonid M. Yermakov; Shreeram Akilesh; Eleanor Y. Chen; Elizabeth Gonzalez; Alejandro Parrales; Marta Zapata-Tarres; Rocio Cardenas-Cardos; Liliana Velasco-Hidalgo; Celso Corcuera-Delgado; Rodolfo Rodriguez-Jurado; Lillia García-Rodríguez; Midhat S. Farooqi; Atif Ali Ahmed

Accurate somatic small variant discovery for multiple sequencing technologies with DeepSomatic 使用deepsmatoma实现多种测序技术的准确体细胞小变异发现

Nature Biotechnology

IF41.7

2025-10-16

PREAI

Jimin Park; Daniel E. Cook; Pi-Chuan Chang; Alexey Kolesnikov; Lucas Brambrink; Juan Carlos Mier; Joshua Gardner; Brandy McNulty; Samuel Sacco; Ayse G. Keskus; Asher Bryant; Tanveer Ahmad; Jyoti Shetty; Yongmei Zhao; Bao Tran; Giuseppe Narzisi; Adrienne Helland; Byunggil Yoo; Irina Pushel; Lisa A. Lansdon; Chengpeng Bi; Adam Walter; Margaret Gibson; Tomi Pastinen; Rebecca Reiman; Sharvari Mankame; T. Rhyker Ranallo-Benavidez; Christine Brown; Nicolas Robine; Floris P. Barthel; Midhat S. Farooqi; Karen H. Miga; Andrew Carroll; Mikhail Kolmogorov; Benedict Paten; Kishwar Shafin

Severus detects somatic structural variation and complex rearrangements in cancer genomes using long-read sequencing Severus通过长读长测序检测癌症基因组中的体细胞结构变异和复杂重排

NATURE BIOTECHNOLOGY

IF41.7

2025-04-04

PREAI

Keskus, Ayse G.; Bryant, Asher; Ahmad, Tanveer; Yoo, Byunggil; Aganezov, Sergey; Goretsky, Anton; Donmez, Ataberk; Lansdon, Lisa A.; Rodriguez, Isabel; Park, Jimin; Liu, Yuelin; Cui, Xiwen; Gardner, Joshua; McNulty, Brandy; Sacco, Samuel; Shetty, Jyoti; Zhao, Yongmei; Tran, Bao; Narzisi, Giuseppe; Helland, Adrienne; Cook, Daniel E.; Chang, Pi-Chuan; Kolesnikov, Alexey; Carroll, Andrew; Molloy, Erin K.; Bi, Chengpeng; Walter, Adam; Gibson, Margaret; Pushel, Irina; Guest, Erin; Pastinen, Tomi; Shafin, Kishwar; Miga, Karen H.; Malikic, Salem; Day, Chi-Ping; Robine, Nicolas; Sahinalp, Cenk; Dean, Michael; Farooqi, Midhat S.; Paten, Benedict; Kolmogorov, Mikhail

A Genomics Driven, Inducible Pluripotent Stem Cell Model of Infant Lymphoblastic Leukemia 基因组驱动的、可诱导的多能干细胞婴儿淋巴母细胞白血病模型

BLOOD

IF23.1

2024-11-05

PREAI

Vacek, Meagan; Nemechek, Jacqelyn; Pushel, Irina; Thornton, Bradley; Leyda, Molly; Kumar, Priyanka Prem; Farooqi, Midhat S.; Guest, Erin M.; Vivian, Jay; Perry, John M.

Proteomic Characterization of Pediatric Acute Lymphoblastic Leukemias Sheds Light on Subtype-Specific Molecular Mechanisms 儿童急性淋巴细胞白血病的蛋白质组学特征揭示其亚型特异性分子机制

BLOOD

IF23.1

2024-11-05

PREAI

Pushel, Irina; Clark, Zachary; Rekowski, Michaella J.; Lansdon, Lisa A.; Yoo, Byunggil; August, Keith J.; Gamis, Alan S.; Guest, Erin M.; Washburn, Michael P.; Farooqi, Midhat S.

Short- and Long-Read RNA Sequencing Improve Molecular Profiling of Pediatric T-Cell Acute Lymphoblastic Leukemia 短读长读RNA测序改善儿童T细胞急性淋巴细胞白血病的分子特征分析

BLOOD

IF23.1

2024-11-05

PREAI

Pushel, Irina; Lansdon, Lisa A.; Yoo, Byunggil; Biswell, Rebecca; Pastinen, Tomi; Farooqi, Midhat S.; August, Keith J.

Azacitidine as epigenetic priming for chemotherapy is safe and well-tolerated in infants with newly diagnosed KMT2A-rearranged acute lymphoblastic leukemia: Children's Oncology Group trial AALL15P1

HAEMATOLOGICA

IF7.9

2024-06-13

OAAI

Guest, Erin M.; Kairalla, John A.; Devidas, Meenakshi; Hibbitts, Emily; Carroll, Andrew J.; Heerema, Nyla A.; Kubaney, Holly R.; August, Margaret A.; Ramesh, Sidharth; Yoo, Byunggil; Farooqi, Midhat S.; Pauly, Melinda G.; Wechsler, Daniel S.; Miles, Rodney R.; Reid, Joel M.; Kihei, Cynthia D.; Gore, Lia; Raetz, Elizabeth A.; Hunger, Stephen P.; Loh, Mignon L.; Brown, Patrick A.

A human induced pluripotent stem cell model of KMT2A rearranged leukemia

CANCER RESEARCH

IF16.6

2024-03-22

PREAI

Guest, Erin; Vacek, Meagan; Nemechek, Jacqelyn; Pushel, Irina; Thornton, Bradley T.; Leyda, Molly; Farooqi, Midhat S.; Perry, John M.; Vivian, Jay L.

Benchmarking long- and short-read somatic structural variation callers using a multi-technology panel of six tumor/normal cell lines

CANCER RESEARCH

IF16.6

2024-03-22

PREAI

Keskus, Ayse; Bryant, Asher; Ahmad, Tanveer; Donmez, Ataberk; Rodriguez, Isabel; Rossi, Nicole; Xie, Yi; Yoo, Byunggil; Milano, Rose; Lou, Hong; Park, Jimin; Gardner, Joshua; McNulty, Brandy; Miga, Karen; Dean, Mike; Farooqi, Midhat; Paten, Benedict; Kolmogorov, Mikhail

Long-read sequencing of pediatric leukemia identifies clinically relevant genomic rearrangements

CANCER RESEARCH

IF16.6

2024-03-22

PREAI

Yoo, Byunggil; Keskus, Ayse; Bi, Chengpeng; Lansdon, Lisa; Ahmad, Tanveer; Pushel, Irina; Walter, Adam; Gibson, Margaret; Guest, Erin; Pastinen, Tomi; Kolmogorov, Mikhail; Farooqi, Midhat S.

ROS1 Alterations as a Potential Driver of Gliomas in Infant, Pediatric, and Adult Patients

MODERN PATHOLOGY

IF5.5

2023-11-01

PREAI

Meredith, David M.; Cooley, Linda D.; Dubuc, Adrian; Morrissette, Jennifer; Sussman, Robyn T.; Nasrallah, MacLean P.; Rathbun, Pamela; Yap, Kai Lee; Wadhwani, Nitin; Bao, Liming; Wolff, Daynna J.; Ida, Cristiane; Sukhanova, Madina; Horbinski, Craig; Jennings, Lawrence J.; Farooqi, Midhat; Gener, Melissa; Ginn, Kevin; Kam, Kwok Ling; Sasakil, Koji; Kanagal-Shamannam, Rashmi; Alexandrescun, Sanda; Brati, Daniel; Lu, Xinyan

Clinical utility of whole-genome DNA methylation profiling as a primary molecular diagnostic assay for central nervous system tumors-A prospective study and guidelines for clinical testing 全基因组DNA甲基化分析作为中枢神经系统肿瘤的主要分子诊断方法的临床应用-前瞻性研究和临床测试指南

NEURO-ONCOLOGY ADVANCES

IF4.1

2023-06-26

OAAI

Galbraith, Kristyn; Vasudevaraja, Varshini; Serrano, Jonathan; Shen, Guomiao; Tran, Ivy; Abdallat, Nancy; Wen, Mandisa; Patel, Seema; Movahed-Ezazi, Misha; Faustin, Arline; Spino-Keeton, Marissa; Roberts, Leah Geiser; Maloku, Ekrem; Drexler, Steven A.; Liechty, Benjamin L.; Pisapia, David; Krasnozhen-Ratush, Olga; Rosenblum, Marc; Shroff, Seema; Boue, Daniel R.; Davidson, Christian; Mao, Qinwen; Suchi, Mariko; North, Paula; Hopp, Amanda; Segura, Annette; Jarzembowski, Jason A.; Parsons, Lauren; Johnson, Mahlon D.; Mobley, Bret; Samore, Wesley; McGuone, Declan; Gopal, Pallavi P.; Canoll, Peter D.; Horbinski, Craig; Fullmer, Joseph M.; Farooqui, Midhat S.; Gokden, Murat; Wadhwani, Nitin R.; Richardson, Timothy E.; Umphlett, Melissa; Tsankova, Nadejda M.; DeWitt, John C.; Sen, Chandra; Placantonakis, Dimitris G.; Pacione, Donato; Wisoff, Jeffrey H.; Teresa Hidalgo, Eveline; Harter, David; William, Christopher M.; Cordova, Christine; Kurz, Sylvia C.; Barbaro, Marissa; Orringer, Daniel A.; Karajannis, Matthias A.; Sulman, Erik P.; Gardner, Sharon L.; Zagzag, David; Tsirigos, Aristotelis; Allen, Jeffrey C.; Golfinos, John G.; Snuderl, Matija

Arima-HiC sequencing accurately detects clinically-relevant structural variants in pediatric leukemia samples

CANCER RESEARCH

IF16.6

2023-04-14

PREAI

Schmitt, Anthony; Melnyk, Shadi; Sikkink, Kristin; Lansdon, Lisa; Pastinen, Tomi; Guest, Erin; Farooqi, Midhat

Single-cell characterization of pediatric T-cell acute lymphoblastic leukemia transcriptomes

CANCER RESEARCH

IF16.6

2023-04-04

PREAI

Pushel, Irina; Yoo, Byunggil; Louiselle, Daniel; Gibson, Margaret; Farooqi, Midhat S.; August, Keith

Long-read sequencing of pediatric cancer genomes identifies multiple clinically relevant variants

CANCER RESEARCH

IF16.6

2023-04-04

PREAI

Yoo, Byunggil; Cheung, Warren; Pushel, Irina; Lansdon, Lisa; Bi, Chengpeng; Guest, Erin; Pastinen, Tomi; Farooqi, Midhat

Clinical Validation of Genome Reference Consortium Human Build 38 in a Laboratory Utilizing Next-Generation Sequencing Technologies 利用下一代测序技术在实验室中进行基因组参考联盟Human Build 38的临床验证

CLINICAL CHEMISTRY

IF6.3

2022-07-25

OAAI

Lansdon, Lisa A.; Cadieux-Dion, Maxime; Herriges, John C.; Johnston, Jeffrey; Yoo, Byunggil; Alaimo, Joseph T.; Thiffault, Isabelle; Miller, Neil; Cohen, Ana S. A.; Repnikova, Elena A.; Zhang, Lei; Farooqi, Midhat S.; Farrow, Emily G.; Saunders, Carol J.

Chromosomal Microarray Reinterpretation: Applications to Pediatric Practice

JOURNAL OF PEDIATRICS

IF3.5

2022-04-01

PREAI

Shi, Guanglu; Xu, Jing; Barnes, Shirelle F.; Farooqi, Midhat S.; Luu, Hung S.; Gotway, Garrett; Park, Jason Y.

Factors Affecting Migration to GRCh38 in Laboratories Performing Clinical Next-Generation Sequencing 在进行临床下一代测序的实验室中影响迁移到GRCh38的因素

JOURNAL OF MOLECULAR DIAGNOSTICS

IF3.4

2021-05-01

OAAI

Lansdon, Lisa A.; Cadieux-Dion, Maxime; Yoo, Byunggil; Miller, Neil; Cohen, Ana S. A.; Zellmer, Lee; Zhang, Lei; Farrow, Emily G.; Thiffault, Isabelle; Repnikova, Elena A.; Cooley, Linda D.; Alaimo, Joseph T.; Porath, Binu; Herriges, John C.; Saunders, Carol J.; Farooqi, Midhat S.

Clinical Validation of Somatic Mutation Detection by the OncoScan CNV Plus Assay

JOURNAL OF MOLECULAR DIAGNOSTICS

IF3.4

2021-01-01

OAAI

Smith, Scott C.; Farooqi, Midhat S.; Gener, Melissa A.; Ginn, Kevin; Joyce, Julie M.; Bendorf, Tara M.; Cooley, Linda D.

Near haploidization is a genomic hallmark which defines a molecular subgroup of giant cell glioblastoma

NEURO-ONCOLOGY ADVANCES

IF4.1

2020-11-12

OAAI

Baker, Tiffany G.; Alden, Jay; Dubuc, Adrian M.; Welsh, Cynthia T.; Znoyko, Iya; Cooley, Linda D.; Farooqi, Midhat S.; Schwartz, Stuart; Li, Yvonne Y.; Cherniack, Andrew D.; Lindhorst, Scott M.; Gener, Melissa; Wolff, Daynna J.; Meredith, David M.

研究方向