Andrea Di Gioacchino - Publications, H-index & Citations

Andrea Di Gioacchino

Universite PSL

9H指数

32论文数

220被引数

收录论文 10

发表时间

Designing molecular RNA switches with Restricted Boltzmann machines 利用受限玻尔兹曼机设计分子RNA开关

Nature Communications

IF15.7

2025-12-18

OAAI

Jorge Fernandez-de-Cossio-Diaz; Pierre Hardouin; Francois-Xavier Lyonnet du Moutier; Andrea Di Gioacchino; Bertrand Marchand; Yann Ponty; Bruno Sargueil; Rémi Monasson; Simona Cocco

Repeats mimic pathogen-associated patterns across a vast evolutionary landscape 重复序列模拟了病原体相关模式，跨越了广阔的进化景观。

Cell Genomics

IF9

2025-09-24

OAAI

Petr Šulc; Andrea Di Gioacchino; Alexander Solovyov; Siyu Sun; Stephen Martis; Sajid A. Marhon; Håvard T. Lindholm; Raymond Chen; Amir Hosseini; Hua Jiang; Bao-Han Ly; Martin S. Taylor; Parinaz Mehdipour; Omar Abdel-Wahab; Nicole Rusk; Nicolas Vabret; John LaCava; Daniel D. De Carvalho; Rémi Monasson; Simona Cocco; Benjamin D. Greenbaum

Deciphering the Code of Viral-Host Adaptation Through Maximum-Entropy Nucleotide Bias Models 通过最大熵核苷酸偏好模型解析病毒-宿主适应的编码

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2025-06-01

OAAI

Di Gioacchino, Andrea; Lecce, Ivan; Greenbaum, Benjamin D.; Monasson, Remi; Cocco, Simona

Cancer cells restrict immunogenicity of retrotransposon expression via distinct mechanisms 癌细胞通过不同机制限制反转录转座子表达的可免疫原性

IMMUNITY

IF26.3

2024-12-01

OAAI

Sun, Siyu; You, Eunae; Hong, Jungeui; Hoyos, David; Del Priore, Isabella; Tsanov, Kaloyan M.; Mattagajasingh, Om; Di Gioacchino, Andrea; Marhon, Sajid A.; Chacon-Barahona, Jonathan; Li, Hao; Jiang, Hua; Hozeifi, Samira; Rosas-Bringas, Omar; Xu, Katherine H.; Song, Yuhui; Lang, Evan R.; Rojas, Alexandra S.; Nieman, Linda T.; Patel, Bidish K.; Murali, Rajmohan; Chanda, Pharto; Karacay, Ali; Vabret, Nicolas; De Carvalho, Daniel D.; Zenklusen, Daniel; Lacava, John; Lowe, Scott W.; Ting, David T.; lacobuzio-Donahue, Christine A.; Solovyov, Alexander; Greenbaum, Benjamin D.

Retroelement decay by the exonuclease XRN1 is a viral mimicry dependency in cancer

CELL REPORTS

IF6.9

2024-02-01

OAAI

Hosseini, Amir; Lindholm, Havard T.; Chen, Raymond; Mehdipour, Parinaz; Marhon, Sajid A.; Ishak, Charles A.; Moore, Paul C.; Classon, Marie; Gioacchino, Raymond Andrea Di; Greenbaum, Benjamin; Carvalho, Daniel D. De

A transfer-learning approach to predict antigen immunogenicity and T-cell receptor specificity

ELIFE

IF0

2023-09-08

OAAI

Bravi, Barbara; Di Gioacchino, Andrea; Fernandez-de-Cossio-Diaz, Jorge; Walczak, Aleksandra M.; Mora, Thierry; Cocco, Simona; Monasson, Remi

sgDI-tector: defective interfering viral genome bioinformatics for detection of coronavirus subgenomic RNAs

RNA

IF5

2021-12-22

OAAI

Di Gioacchino, Andrea; Legendre, Rachel; Rahou, Yannis; Najburg, Valerie; Charneau, Pierre; Greenbaum, Benjamin D.; Tangy, Frederic; van der Werf, Sylvie; Cocco, Simona; Komarova, Anastassia, V

The Heterogeneous Landscape and Early Evolution of Pathogen-Associated CpG Dinucleotides in SARS-CoV-2

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2021-02-08

OAAI

Di Gioacchino, Andrea; Sulc, Petr; Komarova, Anastassia, V; Greenbaum, Benjamin D.; Monasson, Remi; Cocco, Simona

Perils of embedding for sampling problems 抽样问题的嵌入风险

PHYSICAL REVIEW RESEARCH

IF4.2

2020-04-09

OAAI

Marshall, Jeffrey; Di Gioacchino, Andrea; Rieffel, Eleanor G.