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Kdm1a safeguards the topological boundaries of PRC2-repressed genes and prevents aging-related euchromatinization in neurons Kdm1a保护PRC2-repressed基因的拓扑边界，并防止神经元与衰老相关的常染色质化 del Blanco, Beatriz; Ninerola, Sergio; Martin-Gonzalez, Ana M.; Paraiso-Luna, Juan; Kim, Minji; Munoz-Viana, Rafael; Racovac, Carina; Sanchez-Mut, Jose V.; Ruan, Yijun; Barco, Angel 分享 收藏
Spatial and temporal organization of the genome Current state and future aims of the 4D nucleome project Dekker, Job; Alber, Frank; Aufmkolk, Sarah; Beliveau, Brian J.; Bruneau, Benoit G.; Belmont, Andrew S.; Bintu, Lacramioara; Boettiger, Alistair; Calandrelli, Riccardo; Disteche, Christine M.; Gilbert, David M.; Gregor, Thomas; Hansen, Anders S.; Huang, Bo; Huangfu, Danwei; Kalhor, Reza; Leslie, Christina S.; Li, Wenbo; Li, Yun; Ma, Jian; Noble, William S.; Park, Peter J.; Phillips-Cremins, Jennifer E.; Pollard, Katherine S.; Rafelski, Susanne M.; Ren, Bing; Ruan, Yijun; Shav-Tal, Yaron; Shen, Yin; Shendure, Jay; Shu, Xiaokun; Strambio-De-Castillia, Caterina; Vertii, Anastassiia; Zhang, Huaiying; Zhong, Sheng 分享 收藏
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Epigenetic and transcriptomic characterization reveals progression markers and essential pathways in clear cell renal cell carcinoma (vol 14, 1681, 2023) Wu, Yige; Terekhanova, Nadezhda V.; Caravan, Wagma; Al Deen, Nataly Naser; Lal, Preet; Chen, Siqi; Mo, Chia-Kuei; Cao, Song; Li, Yize; Karpova, Alla; Liu, Ruiyang; Zhao, Yanyan; Shinkle, Andrew; Strunilin, Ilya; Weimholt, Cody; Sato, Kazuhito; Yao, Lijun; Serasanambati, Mamatha; Yang, Xiaolu; Wyczalkowski, Matthew; Zhu, Houxiang; Zhou, Daniel Cui; Jayasinghe, Reyka G.; Mendez, Daniel; Wendl, Michael C.; Clark, David; Newton, Chelsea; Ruan, Yijun; Reimers, Melissa A.; Pachynski, Russell K.; Kinsinger, Chris; Jewell, Scott; Chan, Daniel W.; Zhang, Hui; Chaudhuri, Aadel A.; Chheda, Milan G.; Humphreys, Benjamin D.; Mesri, Mehdi; Rodriguez, Henry; Hsieh, James J.; Ding, Li; Chen, Feng 分享 收藏
Epigenetic and transcriptomic characterization reveals progression markers and essential pathways in clear cell renal cell carcinoma Wu, Yige; Terekhanova, Nadezhda V.; Caravan, Wagma; Al Deen, Nataly Naser; Lal, Preet; Chen, Siqi; Mo, Chia-Kuei; Cao, Song; Li, Yize; Karpova, Alla; Liu, Ruiyang; Zhao, Yanyan; Shinkle, Andrew; Strunilin, Ilya; Weimholt, Cody; Sato, Kazuhito; Yao, Lijun; Serasanambati, Mamatha; Yang, Xiaolu; Wyczalkowski, Matthew; Zhu, Houxiang; Zhou, Daniel Cui; Jayasinghe, Reyka G.; Mendez, Daniel; Wendl, Michael C.; Clark, David; Newton, Chelsea; Ruan, Yijun; Reimers, Melissa A.; Pachynski, Russell K.; Kinsinger, Chris; Jewell, Scott; Chan, Daniel W.; Zhang, Hui; Chaudhuri, Aadel A.; Chheda, Milan G.; Humphreys, Benjamin D.; Mesri, Mehdi; Rodriguez, Henry; Hsieh, James J.; Ding, Li; Chen, Feng 分享 收藏
ChIATAC is an efficient strategy for multi-omics mapping of 3D epigenomes from low-cell inputs Chai, Haoxi; Tjong, Harianto; Li, Peng; Liao, Wei; Wang, Ping; Wong, Chee Hong; Ngan, Chew Yee; Leonard, Warren J.; Wei, Chia-Lin; Ruan, Yijun 分享 收藏
Super-resolution visualization of chromatin loop folding in human lymphoblastoid cells using interferometric photoactivated localization microscopy Parteka-Tojek, Zofia; Zhu, Jacqueline Jufen; Lee, Byoungkoo; Jodkowska, Karolina; Wang, Ping; Aaron, Jesse; Chew, Teng-Leong; Banecki, Krzysztof; Plewczynski, Dariusz; Ruan, Yijun 分享 收藏
Multidimensional single-cell analysis of human peripheral blood reveals characteristic features of the immune system landscape in aging and frailty Luo, Oscar Junhong; Lei, Wen; Zhu, Guodong; Ren, Zhiyao; Xu, Yudai; Xiao, Chanchan; Zhang, Hongyi; Cai, Junxiang; Luo, Zhiping; Gao, Lijuan; Su, Jun; Tang, Lei; Guo, Wei; Su, Huanxing; Zhang, Zhang-Jin; Fang, Evandro Fei; Ruan, Yijun; Leng, Sean Xiao; Ju, Zhenyu; Lou, Huiling; Gao, Junling; Peng, Nan; Chen, Jie; Bao, Zhijun; Liu, Feng; Chen, Guobing 分享 收藏
An expansion of the non-coding genome and its regulatory potential underlies vertebrate neuronal diversity Closser, Michael; Guo, Yuchun; Wang, Ping; Patel, Tulsi; Jang, Sumin; Hammelman, Jennifer; De Nooij, Joriene C.; Kopunova, Rachel; Mazzoni, Esteban O.; Ruan, Yijun; Gifford, David K.; Wichterle, Hynek 分享 收藏
Nuclear pore protein NUP210 depletion suppresses metastasis through heterochromatin-mediated disruption of tumor cell mechanical response Amin, Ruhul; Shukla, Anjali; Zhu, Jacqueline Jufen; Kim, Sohyoung; Wang, Ping; Tian, Simon Zhongyuan; Tran, Andy D.; Paul, Debasish; Cappell, Steven D.; Burkett, Sandra; Liu, Huaitian; Lee, Maxwell P.; Kruhlak, Michael J.; Dwyer, Jennifer E.; Simpson, R. Mark; Hager, Gordon L.; Ruan, Yijun; Hunter, Kent W. 分享 收藏
RUNX1-mediated alphaherpesvirus-host trans-species chromatin interaction promotes viral transcription Xiao, Ke; Xiong, Dan; Chen, Gong; Yu, Jinsong; Li, Yue; Chen, Kening; Zhang, Lu; Xu, Yangyang; Xu, Qian; Huang, Xi; Gao, Anran; Cao, Kai; Yan, Keji; Dai, Jinxia; Hu, Xueying; Ruan, Yijun; Fu, Zhenfang; Li, Guoliang; Cao, Gang 分享 收藏
ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization Lee, Byoungkoo; Wang, Jiahui; Cai, Liuyang; Kim, Minji; Namburi, Sandeep; Tjong, Harianto; Feng, Yuliang; Wang, Ping; Tang, Zhonghui; Abbas, Ahmed; Wei, Chia-Lin; Ruan, Yijun; Li, Sheng 分享 收藏
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Chromatin topology reorganization and transcription repression by PML-RARα in acute promyeloid leukemia Wang, Ping; Tang, Zhonghui; Lee, Byoungkoo; Zhu, Jacqueline Jufen; Cai, Liuyang; Szalaj, Przemyslaw; Tian, Simon Zhongyuan; Zheng, Meizhen; Plewczynski, Dariusz; Ruan, Xiaoan; Liu, Edison T.; Wei, Chia-Lin; Ruan, Yijun 分享 收藏
Ultrastructural visualization of 3D chromatin folding using volume electron microscopy and DNA in situ hybridization Trzaskoma, Pawel; Ruszczycki, Blazej; Lee, Byoungkoo; Pels, Katarzyna K.; Krawczyk, Katarzyna; Bokota, Grzegorz; Szczepankiewicz, Andrzej A.; Aaron, Jesse; Walczak, Agnieszka; Sliwinska, Malgorzata A.; Magalska, Adriana; Kadlof, Michal; Wolny, Artur; Parteka, Zofia; Arabasz, Sebastian; Kiss-Arabasz, Magdalena; Plewczynski, Dariusz; Ruan, Yijun; Wilczynski, Grzegorz M. 分享 收藏
Coordinated demethylation of H3K9 and H3K27 is required for rapid inflammatory responses of endothelial cells Higashijima, Yoshiki; Matsui, Yusuke; Shimamura, Teppei; Nakaki, Ryo; Nagai, Nao; Tsutsumi, Shuichi; Abe, Yohei; Link, Verena M.; Osaka, Mizuko; Yoshida, Masayuki; Watanabe, Ryo; Tanaka, Toshihiro; Taguchi, Akashi; Miura, Mai; Ruan, Xiaoan; Li, Guoliang; Inoue, Tsuyoshi; Nangaku, Masaomi; Kimura, Hiroshi; Furukawa, Tetsushi; Aburatani, Hiroyuki; Wada, Youichiro; Ruan, Yijun; Glass, Christopher K.; Kanki, Yasuharu 分享 收藏
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LATS kinase-mediated CTCF phosphorylation and selective loss of genomic binding Luo, Huacheng; Yu, Qin; Liu, Yang; Tang, Ming; Liang, Mingwei; Zhang, Dingpeng; Xiao, Tsan Sam; Wu, Lizi; Tan, Ming; Ruan, Yijun; Bungert, Jorg; Lu, Jianrong 分享 收藏
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