Tomoto Ura - Publications, H-index & Citations

Tomoto Ura

university of tsukuba

6H指数

34论文数

134被引数

收录论文 18

发表时间

A Nonequilibrium Simulation Framework for Reproducing Protein Aggregation in All-Atom Molecular Dynamics Simulations 一种用于在所有原子分子动力学模拟中重现蛋白质聚集的非平衡模拟框架

The Journal of Physical Chemistry B

IF2.9

2026-03-14

PREAI

Moe Iijima; Toya Yoshida; Kentaro Shiraki; Tomoto Ura

Arginine can either suppress or promote the aggregation of egg white proteins depending on solution conditions 精氨酸可以抑制或促进蛋清蛋白的聚集，具体取决于溶液条件。

International Journal of Biological Macromolecules

IF8.5

2026-02-13

PREAI

Takumi Nakamura; Akira Nomoto; Shunsuke Tomita; Tomoto Ura; Kentaro Shiraki

Additive-based protein stabilization for stress-prone and unstable proteins 基于添加剂的蛋白质稳定化处理用于易受应激和不稳定的蛋白质

Protein Expression and Purification

IF1.2

2026-01-01

OAAI

Ura, Tomoto; Nakamura, Takumi; Iijima, Moe; Yoshida, Toya; Shiraki, Kentaro

Mechanism of 1,6-hexanediol-induced protein droplet dissolution: Thermodynamic insights from amino acid solubility

INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

IF8.5

2026-01-01

PREAI

Oda, Haruna; Ura, Tomoto; Ono, Hideaki; Tanaka, Shinji; Kameda, Tomoshi; Wada, Momoyo; Shiraki, Kentaro; Hirano, Atsushi

Differences and Similarities in Protein and Nucleic Acid Structures and Their Biological Interactions 蛋白质和核酸结构的差异与相似性及其生物学相互作用

Current Issues in Molecular Biology 2025, Vol. 47, Page 1019

IF3

2025-12-06

OAAI

Tsutomu Arakawa; Taiji Oyama; Tomoto Ura; Suguru Nishinami; Kentaro Shiraki; Teruo Akuta

Mechanistic insights into the salting-in effect of divalent cations on proteins: Interactions with carboxyl groups and peptide bonds 对二价阳离子对蛋白质的盐溶效应的机制洞察：与羧基和肽键的相互作用

Journal of Molecular Liquids

IF5.2

2025-11-26

PREAI

Toya Yoshida; Tomoto Ura; Tsutomu Arakawa; Kentaro Shiraki; Atsushi Hirano

Non-ionic Detergent-Assisted Refolding of Protein from Protein-SDS Complex 非离子去污剂辅助的从蛋白质-SDS复合物中复性蛋白质

PROTEIN JOURNAL

IF1.4

2025-11-01

PREAI

Akuta, Teruo; Ura, Tomoto; Oikawa, Takeshi; Shibata, Takashi; Shiraki, Kentaro; Arakawa, Tsutomu

Bench-top NMR of water signals: A non-destructive tool for biomacromolecule characterization 台式NMR水信号：一种用于生物大分子表征的非破坏性工具

PROTEIN EXPRESSION AND PURIFICATION

IF1.2

2025-11-01

OAAI

Ura, Tomoto; Oyama, Taiji; Nishimura, Chiaki

SDS protein interactions SDS蛋白质相互作用

Biophysical Chemistry

IF2.2

2025-10-10

PREAI

Tsutomu Arakawa; Daisuke Ejima; Tomoto Ura; Teruo Akuta; Masamichi Oh-Ishi

Effects of sodium dodecyl sulfate, Sarkosyl and sodium lauroyl glutamate on the structure of proteins monitored by agarose native gel electrophoresis and circular dichroism

BIOPHYSICAL CHEMISTRY

IF2.2

2024-11-01

PREAI

Akuta, Teruo; Ura, Tomoto; Oikawa, Takeshi; Tomioka, Yui; Eguchi, Akiko; Arakawa, Tsutomu

Cationic polyelectrolytes prevent the aggregation of L-lactate dehydrogenase under unstable conditions

INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

IF8.5

2024-02-01

PREAI

Yoshida, Toya; Sakakibara, Nanako; Ura, Tomoto; Minamiki, Tsukuru; Shiraki, Kentaro

Activation of oxidoreductases by the formation of enzyme assembly

SCIENTIFIC REPORTS

IF3.9

2023-09-01

OAAI

Ura, Tomoto; Sakakibara, Nanako; Hirano, Yu; Tamada, Taro; Takakusagi, Yoichi; Shiraki, Kentaro; Mikawa, Tsutomu

Activation of L-lactate oxidase by the formation of enzyme assemblies through liquid-liquid phase separation

SCIENTIFIC REPORTS

IF3.9

2023-01-25

OAAI

Ura, Tomoto; Kagawa, Ako; Sakakibara, Nanako; Yagi, Hiromasa; Tochio, Naoya; Kigawa, Takanori; Shiraki, Kentaro; Mikawa, Tsutomu

Affinity of phenolic compounds for transition metal ions immobilized on cation-exchange columns

JOURNAL OF CHROMATOGRAPHY A

IF4

2022-08-01

PREAI

Ura, Tomoto; Kameda, Tomoshi; Laksmi, Fina A.; Ishibashi, Matsujiro; Arakawa, Tsutomu; Shiraki, Kentaro; Hirano, Atsushi

Insight into the protein salting-in mechanism of arginine, magnesium chloride and ethylene glycol: Solvent interaction with aromatic solutes

INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

IF8.5

2021-10-01

OAAI

Ura, Tomoto; Arakawa, Tsutomu; Shiraki, Kentaro

Dynamic behavior of liquid droplets with enzyme compartmentalization triggered by sequential glycolytic enzyme reactions

CHEMICAL COMMUNICATIONS

IF4.2

2021-01-01

OAAI

Ura, Tomoto; Tomita, Shunsuke; Shiraki, Kentaro

The binding affinity of uncharged aromatic solutes for negatively charged resins is enhanced by cations via cation-π interactions: The case of sodium ion and arginine

JOURNAL OF CHROMATOGRAPHY A

IF4

2019-06-01

PREAI

Hirano, Atsushi; Iwashita, Kazuki; Ura, Tomoto; Sakuraba, Shun; Shiraki, Kentaro; Arakawa, Tsutomu; Kameda, Tomoshi

Cytosolic Transport of Nanoparticles through Pressurized Plasma Membranes for Molecular Delivery and Amplification of Intracellular Fluorescence

LANGMUIR

IF3.9

2016-12-06

PREAI

Kaizuka, Yoshihisa; Ura, Tomoto; Lyu, Shaowei; Chao, Ling; Henzie, Joel; Nakao, Hidenobu

研究方向