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Daniel C. Zielinski

University of California San Diego

H指数:23

被引数:5,379

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iModulonMiner 2.0: multi-modality modularization of prokaryotic bulk, single-cell, and community omics data

iModulonMiner 2.0：原核生物体细胞、单细胞和群落组学数据的多种模态模块化

Nucleic Acids Research

IF13.1

2026-10-080

OA

Disentangling factors affecting bacterial transcriptional regulatory network inference

解析影响细菌转录调控网络推断的因素

IF4.1

2026-07-160

OAAI

Dissecting host stress responses for predictable heterologous gene expression in E. coli

解析宿主应激响应以实现E. coli中可预测的异源基因表达

Nucleic Acids Research

IF13.1

2026-04-130

PRE

Rare metabolic gene essentiality is a determinant of microniche adaptation in Eschherichia coli

稀有代谢基因的必需性是埃希氏菌(Escherichia coli)微生态位适应的决定因素。

IF4.9

2025-12-080

PRE

Metabolic growth-coupling strategies for in vivo enzyme selection systems

体内酶选择系统的代谢生长偶联策略

metabolic engineering

IF4.1

2025-06-010

OAAI

PanKB: An interactive microbial pangenome knowledgebase for research, biotechnological innovation, and knowledge mining

NUCLEIC ACIDS RESEARCH

IF13.1

2024-11-220

OAAI

Diversity of Transcriptional Regulatory Adaptation in E. coli

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2024-11-120

OAAI

iModulonDB 2.0: dynamic tools to facilitate knowledge-mining and user-enabled analyses of curated transcriptomic datasets

NUCLEIC ACIDS RESEARCH

IF13.1

2024-11-040

OAAI

A genome-scale metabolic model of a globally disseminated hyperinvasive M1 strain of Streptococcus pyogenes

全球传播的化脓性链球菌高侵袭性M1菌株的基因组规模代谢模型

IF4.6

2024-09-171

OAAI

Repeated glucose oscillations in high cell-density cultures influence stress-related functions of Escherichia coli

IF3.8

2024-09-022

OAAI

Modulating bacterial function utilizing A knowledge base of transcriptional regulatory modules

NUCLEIC ACIDS RESEARCH

IF13.1

2024-08-280

OAAI

The hallmarks of a tradeoff in transcriptomes that balances stress and growth functions

IF4.6

2024-07-233

OAAI

Deciphering nutritional stress responses via knowledge-enriched transcriptomics for microbial engineering

METABOLIC ENGINEERING

IF6.8

2024-07-012

OAAI

Bottom-up parameterization of enzyme rate constants: Reconciling inconsistent data

metabolic engineering

IF4.1

2024-06-010

OAAI

Escherichia coli non-coding regulatory regions are highly conserved

genomics proteomics bioinformatics

IF2.8

2024-05-200

OAAI

Reconstructing the transcriptional regulatory network of probiotic L. reuteri is enabled by transcriptomics and machine learning

IF4.6

2024-03-195

OAAI

Differential Expression Analysis Utilizing Condition-Specific Metabolic Pathways

利用条件特异性代谢途径的差异表达分析

IF3.7

2023-11-030

OAAI

A multi-scale expression and regulation knowledge base for Escherichia coli

NUCLEIC ACIDS RESEARCH

IF13.1

2023-09-1517

OAAI

Elucidation of independently modulated genes in Streptococcus pyogenes reveals carbon sources that control its expression of hemolytic toxins

IF4.6

2023-06-2910

OAAI

Empowering drug off-target discovery with metabolic and structural analysis

NATURE COMMUNICATIONS

IF15.7

2023-06-0911

OAAI