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Phylodynamic analysis of a prolonged meningococcal epidemic reveals multiple introductions and pre-epidemic expansion 脑膜炎球菌长期流行病的系统流行病学分析揭示了多次引入和流行前扩张 Yang, Zuyu; Davies, Heather; Clapham, Jane; Lopez, Liza; Bratcher, Holly B.; Tiong, Audrey; Didelot, Xavier; Maiden, Martin C. J.; Carter, Philip E.; Ren, Xiaoyun 分享 收藏
Epistasis, core-genome disharmony, and adaptation in recombining bacteria Taylor, Aidan J.; Yahara, Koji; Pascoe, Ben; Ko, Seungwon; Mageiros, Leonardos; Mourkas, Evangelos; Calland, Jessica K.; Puranen, Santeri; Hitchings, Matthew D.; Jolley, Keith A.; Kobras, Carolin M.; Bayliss, Sion; Williams, Nicola J.; van Vliet, Arnoud H. M.; Parkhill, Julian; Maiden, Martin C. J.; Corander, Jukka; Hurst, Laurence D.; Falush, Daniel; Keim, Paul; Didelot, Xavier; Kelly, David J.; Sheppard, Samuel K. 分享 收藏
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Rapid expansion and international spread of M1UK in the post-pandemic UK upsurge of Streptococcus pyogenes 在大流行后的英国化脓性链球菌热潮中，M1UK的快速扩张和国际传播 Vieira, Ana; Wan, Yu; Ryan, Yan; Li, Ho Kwong; Guy, Rebecca L.; Papangeli, Maria; Huse, Kristin K.; Reeves, Lucy C.; Soo, Valerie W. C.; Daniel, Roger; Harley, Alessandra; Broughton, Karen; Dhami, Chenchal; Ganner, Mark; Ganner, Marjorie A.; Mumin, Zaynab; Razaei, Maryam; Rundberg, Emma; Mammadov, Rufat; Mills, Ewurabena A.; Sgro, Vincenzo; Mok, Kai Yi; Didelot, Xavier; Croucher, Nicholas J.; Jauneikaite, Elita; Lamagni, Theresa; Brown, Colin S.; Coelho, Juliana; Sriskandan, Shiranee 分享 收藏
Presence of phage- plasmids in multiple serovars of Salmonella enterica Nair, Satheesh; Barker, Clare R.; Bird, Matthew; Greig, David R.; Collins, Caitlin; Painset, Anais; Chattaway, Marie; Pickard, Derek; Larkin, Lesley; Gharbia, Saheer; Didelot, Xavier; Ribeca, Paolo 分享 收藏
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Integrated Analysis of Patient Networks and Plasmid Genomes to Investigate a Regional, Multispecies Outbreak of Carbapenemase-Producing Enterobacterales Carrying Both blaIMP and mcr-9 Genes Wan, Yu; Myall, Ashleigh C.; Boonyasiri, Adhiratha; Bolt, Frances; Ledda, Alice; Mookerjee, Siddharth; Weisse, Andrea Y.; Getino, Maria; Turton, Jane F.; Abbas, Hala; Prakapaite, Ruta; Sabnis, Akshay; Abdolrasouli, Alireza; Malpartida-Cardenas, Kenny; Miglietta, Luca; Donaldson, Hugo; Gilchrist, Mark; Hopkins, Katie L.; Ellington, Matthew J.; Otter, Jonathan A.; Larrouy-Maumus, Gerald; Edwards, Andrew M.; Rodriguez-Manzano, Jesus; Didelot, Xavier; Barahona, Mauricio; Holmes, Alison H.; Jauneikaite, Elita; Davies, Frances 分享 收藏
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Genomic epidemiology of the clinically dominant clonal complex 1 in the Listeria monocytogenes population in the UK 英国单核细胞增生李斯特菌种群中临床优势克隆复合物1的基因组流行病学 Fotopoulou, Emily T.; Jenkins, Claire; Barker, Clare R.; Painset, Anais; Didelot, Xavier; Simbo, Ameze; Douglas, Amy; Godbole, Gauri; Jorgensen, Frieda; Gharbia, Saheer; McLauchlin, Jim 分享 收藏
A smooth tubercle bacillus from Ethiopia phylogenetically close to the Mycobacterium tuberculosis complex Yenew, Bazezew; Ghodousi, Arash; Diriba, Getu; Tesfaye, Ephrem; Cabibbe, Andrea Maurizio; Amare, Misikir; Moga, Shewki; Alemu, Ayinalem; Dagne, Binyam; Sinshaw, Waganeh; Mollalign, Hilina; Meaza, Abyot; Tadesse, Mengistu; Gamtesa, Dinka Fikadu; Abebaw, Yeshiwork; Seid, Getachew; Zerihun, Betselot; Getu, Melak; Chiacchiaretta, Matteo; Gaudin, Cyril; Marceau, Michael; Didelot, Xavier; Tolera, Getachew; Abdella, Saro; Kebede, Abebaw; Getahun, Muluwork; Mehammed, Zemedu; Supply, Philip; Cirillo, Daniela Maria 分享 收藏
Within-host diversity improves phylogenetic and transmission reconstruction of SARS-CoV-2 outbreaks 宿主内多样性改善了SARS-CoV-2暴发的系统发育和传播重建 Ortiz, Arturo Torres; Kendall, Michelle; Storey, Nathaniel; Hatcher, James; Dunn, Helen; Roy, Sunando; Williams, Rachel; Williams, Charlotte; Goldstein, Richard A.; Didelot, Xavier; Harris, Kathryn; Breuer, Judith; Grandjean, Louis 分享 收藏
Analysis of Escherichia coli O157 strains in cattle and humans between Scotland and England & Wales: implications for human health Chase-Topping, Margo; Dallman, Timothy J.; Allison, Lesley; Lupolova, Nadejda; Matthews, Louise; Mitchell, Sonia; Banks, Christopher J.; Prentice, Jamie; Brown, Helen; Tongue, Sue; Henry, Madeleine; Evans, Judith; Gunn, George; Hoyle, Deborah; McNeilly, Tom N.; Fitzgerald, Stephen; Smith-Palmer, Alison; Shaaban, Sharif; Holmes, Anne; Hanson, Mary; Woolhouse, Mark; Didelot, Xavier; Jenkins, Claire; Gally, David L. 分享 收藏
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Phylogenetic analysis of the origin and spread of plague in Madagascar Esquivel Gomez, Luis Roger; Savin, Cyril; Andrianaivoarimanana, Voahangy; Rahajandraibe, Soloandry; Randriantseheno, Lovasoa Nomena; Zhou, Zhemin; Kocher, Arthur; Didelot, Xavier; Rajerison, Minoarisoa; Kuehnert, Denise 分享 收藏
Penicillin Binding Protein Substitutions Cooccur with Fluoroquinolone Resistance in Epidemic Lineages of Multidrug-Resistant Clostridioides difficile Dingle, Kate E.; Freeman, Jane; Didelot, Xavier; Quan, T. Phuong; Eyre, David W.; Swann, Jeremy; Spittal, William D.; Clark, Emma V.; Jolley, Keith A.; Walker, A. Sarah; Wilcox, Mark H.; Crook, Derrick W. 分享 收藏
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