Vieira, Ana; Wan, Yu; Ryan, Yan; Li, Ho Kwong; Guy, Rebecca L.; Papangeli, Maria; Huse, Kristin K.; Reeves, Lucy C.; Soo, Valerie W. C.; Daniel, Roger; Harley, Alessandra; Broughton, Karen; Dhami, Chenchal; Ganner, Mark; Ganner, Marjorie A.; Mumin, Zaynab; Razaei, Maryam; Rundberg, Emma; Mammadov, Rufat; Mills, Ewurabena A.; Sgro, Vincenzo; Mok, Kai Yi; Didelot, Xavier; Croucher, Nicholas J.; Jauneikaite, Elita; Lamagni, Theresa; Brown, Colin S.; Coelho, Juliana; Sriskandan, Shiranee

Presence of phage- plasmids in multiple serovars of Salmonella enterica

MICROBIAL GENOMICS

IF4

2024-05-082

OAAI

KmerAperture: Retaining k-mer synteny for alignment-free extraction of core and accessory differences between bacterial genomes

PLOS GENETICS

IF3.7

2024-04-292

OAAI

Integrated Analysis of Patient Networks and Plasmid Genomes to Investigate a Regional, Multispecies Outbreak of Carbapenemase-Producing Enterobacterales Carrying Both blaIMP and mcr-9 Genes

JOURNAL OF INFECTIOUS DISEASES

IF4.5

2024-01-200

OAAI

Wan, Yu; Myall, Ashleigh C.; Boonyasiri, Adhiratha; Bolt, Frances; Ledda, Alice; Mookerjee, Siddharth; Weisse, Andrea Y.; Getino, Maria; Turton, Jane F.; Abbas, Hala; Prakapaite, Ruta; Sabnis, Akshay; Abdolrasouli, Alireza; Malpartida-Cardenas, Kenny; Miglietta, Luca; Donaldson, Hugo; Gilchrist, Mark; Hopkins, Katie L.; Ellington, Matthew J.; Otter, Jonathan A.; Larrouy-Maumus, Gerald; Edwards, Andrew M.; Rodriguez-Manzano, Jesus; Didelot, Xavier; Barahona, Mauricio; Holmes, Alison H.; Jauneikaite, Elita; Davies, Frances

Inference of Infectious Disease Transmission through a Relaxed Bottleneck Using Multiple Genomes Per Host

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2024-01-031

OAAI

Genomic epidemiology of the clinically dominant clonal complex 1 in the Listeria monocytogenes population in the UK

英国单核细胞增生李斯特菌种群中临床优势克隆复合物1的基因组流行病学

MICROBIAL GENOMICS

IF4

2024-01-021

OAAI

Drivers of epidemic dynamics in real time from daily digital COVID-19 measurements

实时流行病学动态的驱动因素：来自每日数字COVID-19测量数据

Science

IF45.8

2024-01-010

A smooth tubercle bacillus from Ethiopia phylogenetically close to the Mycobacterium tuberculosis complex

NATURE COMMUNICATIONS

IF15.7

2023-11-182

OAAI

Yenew, Bazezew; Ghodousi, Arash; Diriba, Getu; Tesfaye, Ephrem; Cabibbe, Andrea Maurizio; Amare, Misikir; Moga, Shewki; Alemu, Ayinalem; Dagne, Binyam; Sinshaw, Waganeh; Mollalign, Hilina; Meaza, Abyot; Tadesse, Mengistu; Gamtesa, Dinka Fikadu; Abebaw, Yeshiwork; Seid, Getachew; Zerihun, Betselot; Getu, Melak; Chiacchiaretta, Matteo; Gaudin, Cyril; Marceau, Michael; Didelot, Xavier; Tolera, Getachew; Abdella, Saro; Kebede, Abebaw; Getahun, Muluwork; Mehammed, Zemedu; Supply, Philip; Cirillo, Daniela Maria

Within-host diversity improves phylogenetic and transmission reconstruction of SARS-CoV-2 outbreaks

宿主内多样性改善了SARS-CoV-2暴发的系统发育和传播重建

ELIFE

IF0

2023-09-213