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MISIP: a data standard for the reuse and reproducibility of any stable isotope probing-derived nucleic acid sequence and experiment Simpson, Abigayle; Wood-Charlson, Elisha M.; Smith, Montana; Koch, Benjamin J.; Beilsmith, Kathleen; Kimbrel, Jeffrey A.; Kellom, Matthew; Hunter, Christopher, I; Walls, Ramona L.; Schriml, Lynn M.; Wilhelm, Roland C. 分享 收藏
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Metagenome-assembled genome extraction and analysis from microbiomes using KBase (vol 1350, pg 32, 2022) Chivian, Dylan; Jungbluth, Sean P.; Dehal, Paramvir S.; Wood-Charlson, Elisha M.; Canon, Richard S.; Allen, Benjamin H.; Clark, Mikayla M.; Gu, Tianhao; Land, Miriam L.; Price, Gavin A.; Riehl, William J.; Sneddon, Michael W.; Sutormin, Roman; Zhang, Qizhi; Cottingham, Robert W.; Henry, Chris S.; Arkin, Adam P. 分享 收藏
Metagenome-assembled genome extraction and analysis from microbiomes using KBase Chivian, Dylan; Jungbluth, Sean P.; Dehal, Paramvir S.; Wood-Charlson, Elisha M.; Canon, Richard S.; Allen, Benjamin H.; Clark, Mikayla M.; Gu, Tianhao; Land, Miriam L.; Price, Gavin A.; Riehl, William J.; Sneddon, Michael W.; Sutormin, Roman; Zhang, Qizhi; Cottingham, Robert W.; Henry, Chris S.; Arkin, Adam P. 分享 收藏
The National Microbiome Data Collaborative Data Portal: an integrated multi-omics microbiome data resource Eloe-Fadrosh, Emiley A.; Ahmed, Faiza; Anubhav; Babinski, Michal; Baumes, Jeffrey; Borkum, Mark; Bramer, Lisa; Canon, Shane; Christianson, Danielle S.; Corilo, Yuri E.; Davenport, Karen W.; Davis, Brandon; Drake, Meghan; Duncan, William D.; Flynn, Mark C.; Hays, David; Hu, Bin; Huntemann, Marcel; Kelliher, Julia; Lebedeva, Sofya; Li, Po-E; Lipton, Mary; Lo, Chien-Chi; Martin, Stanton; Millard, David; Miller, Kayd; Miller, Mark A.; Piehowski, Paul; Jackson, Elais Player; Purvine, Samuel; Reddy, T. B. K.; Richardson, Rachel; Rudolph, Marisa; Sarrafan, Setareh; Shakya, Migun; Smith, Montana; Stratton, Kelly; Sundaramurthi, Jagadish Chandrabose; Vangay, Pajau; Winston, Donald; Wood-Charlson, Elisha M.; Xu, Yan; Chain, Patrick S. G.; McCue, Lee Ann; Mans, Douglas; Mungall, Christopher J.; Mouncey, Nigel J.; Fagnan, Kjiersten 分享 收藏
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A roadmap for the functional annotation of protein families: a community perspective de Crecy-Lagard, Valerie; de Hegedus, Rocio Amorin; Arighi, Cecilia; Babor, Jill; Bateman, Alex; Blaby, Ian; Blaby-Haas, Crysten; Bridge, Alan J.; Burley, Stephen K.; Cleveland, Stacey; Colwell, Lucy J.; Conesa, Ana; Dallago, Christian; Danchin, Antoine; de Waard, Anita; Deutschbauer, Adam; Dias, Raquel; Ding, Yousong; Fang, Gang; Friedberg, Iddo; Gerlt, John; Goldford, Joshua; Gorelik, Mark; Gyori, Benjamin M.; Henry, Christopher; Hutinet, Geoffrey; Jaroch, Marshall; Karp, Peter D.; Kondratova, Liudmyla; Lu, Zhiyong; Marchler-Bauer, Aron; Martin, Maria-Jesus; McWhite, Claire; Moghe, Gaurav D.; Monaghan, Paul; Morgat, Anne; Mungall, Christopher J.; Natale, Darren A.; Nelson, William C.; O'Donoghue, Sean; Orengo, Christine; O'Toole, Katherine H.; Radivojac, Predrag; Reed, Colbie; Roberts, Richard J.; Rodionov, Dmitri; Rodionova, Irina A.; Rudolf, Jeffrey D.; Saleh, Lana; Sheynkman, Gloria; Thibaud-Nissen, Francoise; Thomas, Paul D.; Uetz, Peter; Vallenet, David; Carter, Erica Watson; Weigele, Peter R.; Wood, Valerie; Wood-Charlson, Elisha M.; Xu, Jin 分享 收藏
iVirus 2.0: Cyberinfrastructure-supported tools and data to power DNA virus ecology Bolduc, Benjamin; Zablocki, Olivier; Guo, Jiarong; Zayed, Ahmed A.; Vik, Dean; Dehal, Paramvir; Wood-Charlson, Elisha M.; Arkin, Adam; Merchant, Nirav; Pett-Ridge, Jennifer; Roux, Simon; Vaughn, Matthew; Sullivan, Matthew B. 分享 收藏
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Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities (vol 6, e01194-20, 2021) 微生物组元数据标准: 国家微生物组数据协作研讨会和后续活动的报告 (第6卷，e01194-20，2021) Vangay, Pajau; Burgin, Josephine; Johnston, Anjanette; Beck, Kristen L.; Berrios, Daniel C.; Blumberg, Kai; Canon, Shane; Chain, Patrick; Chandonia, John-Marc; Christianson, Danielle; Costes, Sylvain V.; Damerow, Joan; Duncan, William D.; Dundore-Arias, Jose Pablo; Fagnan, Kjiersten; Galazka, Jonathan M.; Gibbons, Sean M.; Hays, David; Hervey, Judson; Hu, Bin; Hurwitz, Bonnie L.; Jaiswal, Pankaj; Joachimiak, Marcin P.; Kinkel, Linda; Ladau, Joshua; Martin, Stanton L.; McCue, Lee Ann; Miller, Kayd; Mouncey, Nigel; Mungall, Chris; Pa, Evangelos; Reddy, T. B. K.; Richardson, Lorna; Roux, Simon; Schriml, Lynn M.; Shaffer, Justin P.; Sundaramurthi, Jagadish Chandrabose; Thompson, Luke R.; Timme, Ruth E.; Zheng, Jie; Wood-Charlson, Elisha M.; Eloe-Fadrosh, Emiley A. 分享 收藏
A genomic catalog of Earth's microbiomes (Nov, 10.1038/s41587-020-0718-6, 2020) 地球微生物组的基因组目录 (11月，10.1038/s41587-020-0718-6，2020) Nayfach, Stephen; Roux, Simon; Seshadri, Rekha; Udwary, Daniel; Varghese, Neha; Schulz, Frederik; Wu, Dongying; Paez-Espino, David; Chen, I- Min; Huntemann, Marcel; Palaniappan, Krishna; Ladau, Joshua; Mukherjee, Supratim; Reddy, T. B. K.; Nielsen, Torben; Kirton, Edward; Faria, Jose P.; Edirisinghe, Janaka N.; Henry, Christopher S.; Jungbluth, Sean P.; Chivian, Dylan; Dehal, Paramvir; Wood-Charlson, Elisha M.; Arkin, Adam P.; Tringe, Susannah G.; Visel, Axel; Woyke, Tanja; Mouncey, Nigel J.; Ivanova, Natalia N.; Kyrpides, Nikos C.; Eloe-Fadrosh, Emiley A. 分享 收藏
Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities 微生物组元数据标准: 国家微生物组数据协作研讨会和后续活动的报告 Vangay, Pajau; Burgin, Josephine; Johnston, Anjanette; Beck, Kristen L.; Berrios, Daniel C.; Blumberg, Kai; Canon, Shane; Chain, Patrick; Chandonia, John-Marc; Christianson, Danielle; Costes, Sylvain V.; Damerow, Joan; Duncan, William D.; Dundore-Arias, Jose Pablo; Fagnan, Kjiersten; Galazka, Jonathan M.; Gibbons, Sean M.; Hays, David; Hervey, Judson; Hu, Bin; Hurwitz, Bonnie L.; Jaiswal, Pankaj; Joachimiak, Marcin P.; Kinkel, Linda; Ladau, Joshua; Martin, Stanton L.; McCue, Lee Ann; Miller, Kayd; Mouncey, Nigel; Mungall, Chris; Pafilis, Evangelos; Reddy, T. B. K.; Richardson, Lorna; Roux, Simon; Schriml, Lynn M.; Shaffer, Justin P.; Sundaramurthi, Jagadish Chandrabose; Thompson, Luke R.; Timme, Ruth E.; Zheng, Jie; Wood-Charlson, Elisha M.; Eloe-Fadrosh, Emiley A. 分享 收藏
A genomic catalog of Earth's microbiomes (November, 10.1038/s41587-020-0718-6, 2020) 地球微生物组的基因组目录 (11月，10.1038/s41587-020-0718-6，2020) Nayfach, Stephen; Roux, Simon; Seshadri, Rekha; Udwary, Daniel; Varghese, Neha; Schulz, Frederik; Wu, Dongying; Paez-Espino, David; Chen, I-Min; Huntemann, Marcel; Palaniappan, Krishna; Ladau, Joshua; Mukherjee, Supratim; Reddy, T. B. K.; Nielsen, Torben; Kirton, Edward; Faria, Jose P.; Edirisinghe, Janaka N.; Henry, Christopher S.; Jungbluth, Sean P.; Chivian, Dylan; Dehal, Paramvir; Wood-Charlson, Elisha M.; Arkin, Adam P.; Tringe, Susannah G.; Visel, Axel; Woyke, Tanja; Mouncey, Nigel J.; Ivanova, Natalia N.; Kyrpides, Nikos C.; Eloe-Fadrosh, Emiley A. 分享 收藏
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes (vol 49, pg D575, 2021) Seaver, Samuel M. D.; Liu, Filipe; Zhang, Qizhi; Jeffryes, James; Faria, Jose P.; Edirisinghe, Janaka N.; Mundy, Michael; Chia, Nicholas; Noor, Elad; Beber, Moritz E.; Best, Aaron A.; DeJongh, Matthew; Kimbrel, Jeffrey A.; D'haeseleer, Patrik; McCorkle, Sean R.; Bolton, Jay R.; Pearson, Erik; Canon, Shane; Wood-Charlson, Elisha M.; Cottingham, Robert W.; Arkin, Adam P.; Henry, Christopher S. 分享 收藏
A genomic catalog of Earth's microbiomes 地球微生物组的基因组目录 Nayfach, Stephen; Roux, Simon; Seshadri, Rekha; Udwary, Daniel; Varghese, Neha; Schulz, Frederik; Wu, Dongying; Paez-Espino, David; Chen, I-Min; Huntemann, Marcel; Palaniappan, Krishna; Ladau, Joshua; Mukherjee, Supratim; Reddy, T. B. K.; Nielsen, Torben; Kirton, Edward; Faria, Jose P.; Edirisinghe, Janaka N.; Henry, Christopher S.; Jungbluth, Sean P.; Chivian, Dylan; Dehal, Paramvir; Wood-Charlson, Elisha M.; Arkin, Adam P.; Tringe, Susannah G.; Visel, Axel; Woyke, Tanja; Mouncey, Nigel J.; Ivanova, Natalia N.; Kyrpides, Nikos C.; Eloe-Fadrosh, Emiley A. 分享 收藏
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes 用于整合代谢注释的ModelSEED生物化学数据库以及植物，真菌和微生物代谢模型的重建，比较和分析 Seaver, Samuel M. D.; Liu, Filipe; Zhang, Qizhi; Jeffryes, James; Faria, Jose P.; Edirisinghe, Janaka N.; Mundy, Michael; Chia, Nicholas; Noor, Elad; Beber, Moritz E.; Best, Aaron A.; DeJongh, Matthew; Kimbrel, Jeffrey A.; D'haeseleer, Patrik; McCorkle, Sean R.; Bolton, Jay R.; Pearson, Erik; Canon, Shane; Wood-Charlson, Elisha M.; Cottingham, Robert W.; Arkin, Adam P.; Henry, Christopher S. 分享 收藏
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The National Microbiome Data Collaborative: enabling microbiome science Wood-Charlson, Elisha M.; Anubhav; Auberry, Deanna; Blanco, Hannah; Borkum, Mark I.; Corilo, Yuri E.; Davenport, Karen W.; Deshpande, Shweta; Devarakonda, Ranjeet; Drake, Meghan; Duncan, William D.; Flynn, Mark C.; Hays, David; Hu, Bin; Huntemann, Marcel; Li, Po-E; Lipton, Mary; Lo, Chien-Chi; Millard, David; Miller, Kayd; Piehowski, Paul D.; Purvine, Samuel; Reddy, T. B. K.; Shakya, Migun; Sundaramurthi, Jagadish Chandrabose; Vangay, Pajau; Wei, Yaxing; Wilson, Bruce E.; Canon, Shane; Chain, Patrick S. G.; Fagnan, Kjiersten; Martin, Stanton; McCue, Lee Ann; Mungall, Christopher J.; Mouncey, Nigel J.; Maxon, Mary E.; Eloe-Fadrosh, Emiley A. 分享 收藏
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