未登录 Genomes OnLine Database (GOLD) v.10: new features and updates 基因组在线数据库 (GOLD) v.10: 新功能和更新 Mukherjee, Supratim; Stamatis, Dimitri; Li, Cindy Tianqing; Ovchinnikova, Galina; Kandimalla, Mahathi; Handke, Van; Reddy, Anuha; Ivanova, Natalia; Woyke, Tanja; Eloe-Fardosh, Emiley A.; Chen, I-Min A.; Kyrpides, Nikos C.; Reddy, T. B. K. 分享 收藏
Genomes OnLine Database (GOLD) v.8: overview and updates (vol 49,Pg D723-D733,2021) Mukherjee, Supratim; Stamatis, Dimitri; Bertsch, Jon; Ovchinnikova, Galina; Sundaramurthi, Jagadish Chandrabose; Lee, Janey; Kandimalla, Mahathi; Woyke, Tanja; Eloe-Fardosh, Emiley A.; Kyrpides, Nikos C.; Reddy, T. B. K. 分享 收藏
IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata IMG/PR: 来自基因组和元基因组的质粒数据库，具有丰富的注释和元数据 Camargo, Antonio Pedro; Call, Lee; Roux, Simon; Nayfach, Stephen; Huntemann, Marcel; Palaniappan, Krishnaveni; Ratner, Anna; Chu, Ken; Mukherjeep, Supratim; Reddy, T. B. K.; Chen, I-Min A.; Ivanova, Natalia N.; Eloe-Fadrosh, Emiley A.; Woyke, Tanja; Baltrus, David A.; Castaneda-Barba, Salvador; de la Cruz, Fernando; Funnell, Barbara E.; Hall, James P. J.; Mukhopadhyay, Aindrila; Rocha, Eduardo P. C.; Stalder, Thibault; Top, Eva; Kyrpides, Nikos C. 分享 收藏
Discovery of a novel filamentous prophage in the genome of the Mimosa pudica microsymbiont Cupriavidus taiwanensis STM 6018 在含羞草微共生体cuppriavidus taiwanensis STM 6018的基因组中发现了一种新的丝状噬菌体 Klonowska, Agnieszka; Ardley, Julie; Moulin, Lionel; Zandberg, Jaco; Patrel, Delphine; Gollagher, Margaret; Marinova, Dora; Reddy, T. B. K.; Varghese, Neha; Huntemann, Marcel; Woyke, Tanja; Seshadri, Rekha; Ivanova, Natalia; Kyrpides, Nikos; Reeve, Wayne 分享 收藏
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Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes 用824分离的参考基因组扩展放线菌的基因组百科全书 Seshadri, Rekha; Roux, Simon; Huber, Katharina J.; Wu, Dongying; Yu, Sora; Udwary, Dan; Call, Lee; Nayfach, Stephen; Hahnke, Richard L.; Pukall, Rudiger; White, James R.; Varghese, Neha J.; Webb, Cody; Palaniappan, Krishnaveni; Reimer, Lorenz C.; Sarda, Joaquim; Bertsch, Jonathon; Mukherjee, Supratim; Reddy, T. B. K.; Hajek, Patrick P.; Huntemann, Marcel; Chen, I-Min A.; Spunde, Alex; Clum, Alicia; Shapiro, Nicole; Wu, Zong-Yen; Zhao, Zhiying; Zhou, Yuguang; Evtushenko, Lyudmila; Thijs, Sofie; Stevens, Vincent; Eloe-Fadrosh, Emiley A.; Mouncey, Nigel J.; Yoshikuni, Yasuo; Whitman, William B.; Klenk, Hans-Peter; Woyke, Tanja; Goeker, Markus; Kyrpides, Nikos C.; Ivanova, Natalia N. 分享 收藏
IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata IMG/VR v4: 在广泛的功能，分类和生态元数据框架内的未培养病毒基因组的扩展数据库 Camargo, Antonio Pedro; Nayfach, Stephen; Chen, I-Min A.; Palaniappan, Krishnaveni; Ratner, Anna; Chu, Ken; Ritter, Stephan J.; Reddy, T. B. K.; Mukherjee, Supratim; Schulz, Frederik; Call, Lee; Neches, Russell Y.; Woyke, Tanja; Ivanova, Natalia N.; Eloe-Fadrosh, Emiley A.; Kyrpides, Nikos C.; Roux, Simon 分享 收藏
The IMG/M data management and analysis system v.7: content updates and new features IMG/M数据管理和分析系统v.7: 内容更新和新功能 Chen, I-Min A.; Chu, Ken; Palaniappan, Krishnaveni; Ratner, Anna; Huang, Jinghua; Huntemann, Marcel; Hajek, Patrick; Ritter, Stephan J.; Webb, Cody; Wu, Dongying; Varghese, Neha J.; Reddy, T. B. K.; Mukherjee, Supratim; Ovchinnikova, Galina; Nolan, Matt; Seshadri, Rekha; Roux, Simon; Visel, Axel; Woyke, Tanja; Eloe-Fadrosh, Emiley A.; Kyrpides, Nikos C.; Ivanova, Natalia N. 分享 收藏
Twenty-five years of Genomes OnLine Database (GOLD): data updates and new features in v.9 25年的基因组在线数据库 (GOLD): v.9中的数据更新和新功能 Mukherjee, Supratim; Stamatis, Dimitri; Li, Cindy Tianqing; Ovchinnikova, Galina; Bertsch, Jon; Sundaramurthi, Jagadish Chandrabose; Kandimalla, Mahathi; Nicolopoulos, Paul A.; Favognano, Alessandro; Chen, I-Min A.; Kyrpides, Nikos C.; Reddy, T. B. K. 分享 收藏
The National Microbiome Data Collaborative Data Portal: an integrated multi-omics microbiome data resource Eloe-Fadrosh, Emiley A.; Ahmed, Faiza; Anubhav; Babinski, Michal; Baumes, Jeffrey; Borkum, Mark; Bramer, Lisa; Canon, Shane; Christianson, Danielle S.; Corilo, Yuri E.; Davenport, Karen W.; Davis, Brandon; Drake, Meghan; Duncan, William D.; Flynn, Mark C.; Hays, David; Hu, Bin; Huntemann, Marcel; Kelliher, Julia; Lebedeva, Sofya; Li, Po-E; Lipton, Mary; Lo, Chien-Chi; Martin, Stanton; Millard, David; Miller, Kayd; Miller, Mark A.; Piehowski, Paul; Jackson, Elais Player; Purvine, Samuel; Reddy, T. B. K.; Richardson, Rachel; Rudolph, Marisa; Sarrafan, Setareh; Shakya, Migun; Smith, Montana; Stratton, Kelly; Sundaramurthi, Jagadish Chandrabose; Vangay, Pajau; Winston, Donald; Wood-Charlson, Elisha M.; Xu, Yan; Chain, Patrick S. G.; McCue, Lee Ann; Mans, Douglas; Mungall, Christopher J.; Mouncey, Nigel J.; Fagnan, Kjiersten 分享 收藏
Sodalis ligni Strain 159R Isolated from an Anaerobic Lignin-Degrading Consortium 从厌氧木质素降解联盟中分离出的Sodalis ligni菌株159R Chaput, Gina; Ford, Jacob; DeDiego, Lani; Narayanan, Achala; Tam, Wing Yin; Whalen, Meghan; Huntemann, Marcel; Clum, Alicia; Spunde, Alex; Pillay, Manoj; Palaniappan, Krishnaveni; Varghese, Neha; Mikhailova, Natalia; Chen, I-Min; Stamatis, Dimitrios; Reddy, T. B. K.; O'Malley, Ronan; Daum, Chris; Shapiro, Nicole; Ivanova, Natalia; Kyrpides, Nikos C.; Woyke, Tanja; Glavina del Rio, Tijana; DeAngelis, Kristen M. 分享 收藏
The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host 适应酸性土壤的菌株根瘤菌favelukesii OR191的基因组编码与反向重复序列缺乏进化枝和菜豆状豆科植物宿主有效共生相互作用的决定因素 Eardly, Bertrand; Osman, Wan Adnawani Meor; Ardley, Julie; Zandberg, Jaco; Gollagher, Margaret; van Berkum, Peter; Elia, Patrick; Marinova, Dora; Seshadri, Rekha; Reddy, T. B. K.; Ivanova, Natalia; Pati, Amrita; Woyke, Tanja; Kyrpides, Nikos; Loedolff, Matthys; Laird, Damian W.; Reeve, Wayne 分享 收藏
Medicago root nodule microbiomes: insights into a complex ecosystem with potential candidates for plant growth promotion Martinez-Hidalgo, Pilar; Humm, Ethan A.; Still, David W.; Shi, Baochen; Pellegrini, Matteo; de la Roca, Gabriela; Veliz, Esteban; Maymon, Maskit; Bru, Pierrick; Huntemann, Marcel; Clum, Alicia; Palaniappan, Krishnaveni; Varghese, Neha; Mukherjee, Supratim; Reddy, T. B. K.; Daum, Chris; Ivanova, Natalia N.; Kyrpides, Nikos C.; Shapiro, Nicole; Eloe-Fadrosh, Emiley A.; Hirsch, Ann M. 分享 收藏
The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole 从极点到极点的上层海洋藻类微生物群落的生物地理分化 Martin, Kara; Schmidt, Katrin; Toseland, Andrew; Boulton, Chris A.; Barry, Kerrie; Beszteri, Bank; Brussaard, Corina P. D.; Clum, Alicia; Daum, Chris G.; Eloe-Fadrosh, Emiley; Fong, Allison; Foster, Brian; Foster, Bryce; Ginzburg, Michael; Huntemann, Marcel; Ivanova, Natalia N.; Kyrpides, Nikos C.; Lindquist, Erika; Mukherjee, Supratim; Palaniappan, Krishnaveni; Reddy, T. B. K.; Rizkallah, Mariam R.; Roux, Simon; Timmermans, Klaas; Tringe, Susannah G.; van de Poll, Willem H.; Varghese, Neha; Valentin, Klaus U.; Lenton, Timothy M.; Grigoriev, Igor V.; Leggett, Richard M.; Moulton, Vincent; Mock, Thomas 分享 收藏
DOE JGI Metagenome Workflow DOE JGI宏基因组工作流 Clum, Alicia; Huntemann, Marcel; Bushnell, Brian; Foster, Brian; Foster, Bryce; Roux, Simon; Hajek, Patrick P.; Varghese, Neha; Mukherjee, Supratim; Reddy, T. B. K.; Daum, Chris; Yoshinaga, Yuko; O'Malley, Ronan; Seshadri, Rekha; Kyrpides, Nikos C.; Eloe-Fadrosh, Emiley A.; Chen, I-Min A.; Copeland, Alex; Ivanova, Natalia N. 分享 收藏
Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities (vol 6, e01194-20, 2021) 微生物组元数据标准: 国家微生物组数据协作研讨会和后续活动的报告 (第6卷，e01194-20，2021) Vangay, Pajau; Burgin, Josephine; Johnston, Anjanette; Beck, Kristen L.; Berrios, Daniel C.; Blumberg, Kai; Canon, Shane; Chain, Patrick; Chandonia, John-Marc; Christianson, Danielle; Costes, Sylvain V.; Damerow, Joan; Duncan, William D.; Dundore-Arias, Jose Pablo; Fagnan, Kjiersten; Galazka, Jonathan M.; Gibbons, Sean M.; Hays, David; Hervey, Judson; Hu, Bin; Hurwitz, Bonnie L.; Jaiswal, Pankaj; Joachimiak, Marcin P.; Kinkel, Linda; Ladau, Joshua; Martin, Stanton L.; McCue, Lee Ann; Miller, Kayd; Mouncey, Nigel; Mungall, Chris; Pa, Evangelos; Reddy, T. B. K.; Richardson, Lorna; Roux, Simon; Schriml, Lynn M.; Shaffer, Justin P.; Sundaramurthi, Jagadish Chandrabose; Thompson, Luke R.; Timme, Ruth E.; Zheng, Jie; Wood-Charlson, Elisha M.; Eloe-Fadrosh, Emiley A. 分享 收藏
Genomics, Exometabolomics, and Metabolic Probing Reveal Conserved Proteolytic Metabolism of Thermoflexus hugenholtzii and Three Candidate Species From China and Japan Thomas, Scott C.; Payne, Devon; Tamadonfar, Kevin O.; Seymour, Cale O.; Jiao, Jian-Yu; Murugapiran, Senthil K.; Lai, Dengxun; Lau, Rebecca; Bowen, Benjamin P.; Silva, Leslie P.; Louie, Katherine B.; Huntemann, Marcel; Clum, Alicia; Spunde, Alex; Pillay, Manoj; Palaniappan, Krishnaveni; Varghese, Neha; Mikhailova, Natalia; Chen, I-Min; Stamatis, Dimitrios; Reddy, T. B. K.; O'Malley, Ronan; Daum, Chris; Shapiro, Nicole; Ivanova, Natalia; Kyrpides, Nikos C.; Woyke, Tanja; Eloe-Fadrosh, Emiley; Hamilton, Trinity L.; Dijkstra, Paul; Dodsworth, Jeremy A.; Northen, Trent R.; Li, Wen-Jun; Hedlund, Brian P. 分享 收藏
A genomic catalog of Earth's microbiomes (Nov, 10.1038/s41587-020-0718-6, 2020) 地球微生物组的基因组目录 (11月，10.1038/s41587-020-0718-6，2020) Nayfach, Stephen; Roux, Simon; Seshadri, Rekha; Udwary, Daniel; Varghese, Neha; Schulz, Frederik; Wu, Dongying; Paez-Espino, David; Chen, I- Min; Huntemann, Marcel; Palaniappan, Krishna; Ladau, Joshua; Mukherjee, Supratim; Reddy, T. B. K.; Nielsen, Torben; Kirton, Edward; Faria, Jose P.; Edirisinghe, Janaka N.; Henry, Christopher S.; Jungbluth, Sean P.; Chivian, Dylan; Dehal, Paramvir; Wood-Charlson, Elisha M.; Arkin, Adam P.; Tringe, Susannah G.; Visel, Axel; Woyke, Tanja; Mouncey, Nigel J.; Ivanova, Natalia N.; Kyrpides, Nikos C.; Eloe-Fadrosh, Emiley A. 分享 收藏
Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities 微生物组元数据标准: 国家微生物组数据协作研讨会和后续活动的报告 Vangay, Pajau; Burgin, Josephine; Johnston, Anjanette; Beck, Kristen L.; Berrios, Daniel C.; Blumberg, Kai; Canon, Shane; Chain, Patrick; Chandonia, John-Marc; Christianson, Danielle; Costes, Sylvain V.; Damerow, Joan; Duncan, William D.; Dundore-Arias, Jose Pablo; Fagnan, Kjiersten; Galazka, Jonathan M.; Gibbons, Sean M.; Hays, David; Hervey, Judson; Hu, Bin; Hurwitz, Bonnie L.; Jaiswal, Pankaj; Joachimiak, Marcin P.; Kinkel, Linda; Ladau, Joshua; Martin, Stanton L.; McCue, Lee Ann; Miller, Kayd; Mouncey, Nigel; Mungall, Chris; Pafilis, Evangelos; Reddy, T. B. K.; Richardson, Lorna; Roux, Simon; Schriml, Lynn M.; Shaffer, Justin P.; Sundaramurthi, Jagadish Chandrabose; Thompson, Luke R.; Timme, Ruth E.; Zheng, Jie; Wood-Charlson, Elisha M.; Eloe-Fadrosh, Emiley A. 分享 收藏
Aerobic bacteria and archaea tend to have larger and more versatile genomes Nielsen, Daniel A.; Fierer, Noah; Geoghegan, Jemma L.; Gillings, Michael R.; Gumerov, Vadim; Madin, Joshua S.; Moore, Lisa; Paulsen, Ian T.; Reddy, T. B. K.; Tetu, Sasha G.; Westoby, Mark 分享 收藏
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