Thomas Schmidt - Publications, H-index & Citations

Thomas Schmidt

University College Cork

42H指数

158论文数

8.9K被引数

收录论文 35

发表时间

Unbinned contigs expand known diversity in the global microbiome 未分箱的contigs扩展了全球微生物组中已知的多样性

Nature Microbiology

IF19.4

2026-04-03

OAAI

Vishnu Prasoodanan PK; Oleksandr M. Maistrenko; Anthony Fullam; Daniel R. Mende; Ece Kartal; Luis Pedro Coelho; Anja Spang; Peer Bork; Thomas S. B. Schmidt

The MicrobeAtlas database: Global trends and insights into Earth’s microbial ecosystems 微生物组数据库：地球微生物生态系统的全球趋势与洞见

Cell

IF42.5

2026-02-25

OAAI

João Frederico Matias Rodrigues; Janko Tackmann; Lukas Malfertheiner; David Patsch; Eugenio Perez-Molphe-Montoya; Nicolas Näpflin; Daniela Gaio; Gregor Rot; Mihai Danaila; Matteo Eustachio Peluso; Marija Dmitrijeva; Thomas Sebastian Benedikt Schmidt; Christian von Mering

VIRE: a metagenome-derived, planetary-scale virome resource with environmental context VIRE：一个基于宏基因组学、具有环境背景信息的行星尺度病毒组资源

NUCLEIC ACIDS RESEARCH

IF13.1

2025-11-01

PREAI

Nishijima, Suguru; Fullam, Anthony; Schmidt, Thomas S. B.; Kuhn, Michael; Bork, Peer

proGenomes4: providing 2 million accurately and consistently annotated high-quality prokaryotic genomes proGenomes4：提供200万份准确且一致注释的高质量原核生物基因组

NUCLEIC ACIDS RESEARCH

IF13.1

2025-11-01

OAAI

Fullam, Anthony; Letunic, Ivica; Maistrenko, Oleksandr M.; Castro, Alexandre Areias; Coelho, Luis Pedro; Grekova, Anastasiia; Schudoma, Christian; Khedkar, Supriya; Robbani, Mahdi; Kuhn, Michael; Schmidt, Thomas S. B.; Bork, Peer; Mende, Daniel R.

Metalog: curated and harmonised contextual data for global metagenomics samples Metalog：全球宏基因组样本的精选与协调的上下文数据

NUCLEIC ACIDS RESEARCH

IF13.1

2025-10-01

PREAI

Kuhn, Michael; Schmidt, Thomas Sebastian B.; Ferretti, Pamela; Glazek, Anna; Robbani, Shahriyar mahdi; Akanni, Wasiu; Fullam, Anthony; Schudoma, Christian; Cetin, Ela; Hassan, Mariam; Noack, Kasimir; Schwarz, Anna; Thielemann, Roman; Thomas, Leonie; Von stetten, Moritz; Alves, Renato; Iyappan, Anandhi; Kartal, Ece; Kel, Ivan; Keller, Marisa i; Maistrenko, Oleksandr; Mankowski, Anna; Nishijima, Suguru; Podlesny, Daniel; Schiller, Jonas; Schulz, Sarah; Van rossum, Thea; Bork, Peer

Effects of lyophilised faecal filtrate compared with lyophilised donor stool on Clostridioides difficile recurrence: a multicentre, randomised, double-blinded, non-inferiority trial 与冷冻干燥供体粪便相比，冷冻干燥粪便滤液对艰难梭菌复发的效果：一项多中心、随机、双盲、非劣效性试验

The Lancet Gastroenterology & Hepatology

IF0

2025-09-22

PREAI

Dina Kao; Karen Wong; Christine Lee; Theodor Steiner; Rose Franz; Chelsea McDougall; Marisela Silva; Thomas S B Schmidt; Jens Walter; Raimar Loebenberg; Tanya M Monaghan; Ryland T Giebelhaus; James J Harynuk; Huiping Xu; Maryna Yaskina; Karen V MacDonald; Deborah A Marshall; Thomas Louie

A catalog of small proteins from the global microbiome

NATURE COMMUNICATIONS

IF15.7

2024-08-31

OAAI

Duan, Yiqian; Santos-Junior, Celio Dias; Schmidt, Thomas Sebastian; Fullam, Anthony; de Almeida, Breno L. S.; Zhu, Chengkai; Kuhn, Michael; Zhao, Xing-Ming; Bork, Peer; Coelho, Luis Pedro

Development of non-alcoholic steatohepatitis is associated with gut microbiota but not with oxysterol enzymes CH25H, EBI2, or CYP7B1 in mice 小鼠非酒精性脂肪性肝炎的发生与肠道菌群相关，但与氧固醇酶CH25H、EBI2或CYP7B1无关

BMC MICROBIOLOGY

IF4.2

2024-02-28

OAAI

Wyss, Jacqueline; Raselli, Tina; Wyss, Annika; Telzerow, Anja; Rogler, Gerhard; Krupka, Niklas; Yilmaz, Bahtiyar; Schmidt, Thomas S. B.; Misselwitz, Benjamin

SPIRE: a Searchable, Planetary-scale mIcrobiome REsource

NUCLEIC ACIDS RESEARCH

IF13.1

2023-10-28

OAAI

Schmidt, Thomas S. B.; Fullam, Anthony; Ferretti, Pamela; Orakov, Askarbek; Maistrenko, Oleksandr M.; Ruscheweyh, Hans-Joachim; Letunic, Ivica; Duan, Yiqian; Van Rossum, Thea; Sunagawa, Shinichi; Mende, Daniel R.; Finn, Robert D.; Kuhn, Michael; Pedro Coelho, Luis; Bork, Peer

Consistency across multi-omics layers in a drug-perturbed gut microbial community 药物干扰的肠道微生物群落中多组学层之间的一致性

MOLECULAR SYSTEMS BIOLOGY

IF7.7

2023-07-24

OAAI

Wuyts, Sander; Alves, Renato; Zimmermann-Kogadeeva, Maria; Nishijima, Suguru; Blasche, Sonja; Driessen, Marja; Geyer, Philipp E.; Hercog, Rajna; Kartal, Ece; Maier, Lisa; Mueller, Johannes B.; Santamarina, Sarela Garcia; Schmidt, Thomas Sebastian B.; Sevin, Daniel C.; Telzerow, Anja; Treit, Peter, V; Wenzel, Tobias; Typas, Athanasios; Patil, Kiran R.; Mann, Matthias; Kuhn, Michael; Bork, Peer

Alterations of oral microbiota and impact on the gut microbiome in type 1 diabetes mellitus revealed by integrated multi-omic analyses 综合多组学分析揭示1型糖尿病患者口腔微生物群的改变及其对肠道菌群的影响

MICROBIOME

IF12.7

2022-12-28

OAAI

Kunath, B. J.; Hickl, O.; Queiros, P.; Martin-Gallausiaux, C.; Lebrun, L. A.; Halder, R.; Laczny, C. C.; Schmidt, T. S. B.; Hayward, M. R.; Becher, D.; Heintz-Buschart, A.; de Beaufort, C.; Bork, P.; May, P.; Wilmes, P.

proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes

NUCLEIC ACIDS RESEARCH

IF13.1

2022-11-21

OAAI

Fullam, Anthony; Letunic, Ivica; Schmidt, Thomas S. B.; Ducarmon, Quinten R.; Karcher, Nicolai; Khedkar, Supriya; Kuhn, Michael; Larralde, Martin; Maistrenko, Oleksandr M.; Malfertheiner, Lukas; Milanese, Alessio; Rodrigues, Joao Frederico Matias; Sanchis-Lopez, Claudia; Schudoma, Christian; Szklarczyk, Damian; Sunagawa, Shinichi; Zeller, Georg; Huerta-Cepas, Jaime; von Mering, Christian; Bork, Peer; Mende, Daniel R.

Drivers and determinants of strain dynamics following fecal microbiota transplantation 粪便微生物移植后菌株动力学的驱动因素和决定因素

NATURE MEDICINE

IF50

2022-09-15

OAAI

Schmidt, Thomas S. B.; Li, Simone S.; Maistrenko, Oleksandr M.; Akanni, Wasiu; Coelho, Luis Pedro; Dolai, Sibasish; Fullam, Anthony; Glazek, Anna M.; Hercog, Rajna; Herrema, Hilde; Jung, Ferris; Kandels, Stefanie; Orakov, Askarbek; Thielemann, Roman; von Stetten, Moritz; Van Rossum, Thea; Benes, Vladimir; Borody, Thomas J.; de Vos, Willem M.; Ponsioen, Cyriel Y.; Nieuwdorp, Max; Bork, Peer

Metagenomic Identification of Microbial Signatures Predicting Pancreatic Cancer From a Multinational Study

GASTROENTEROLOGY

IF25.1

2022-07-01

OAAI

Nagata, Naoyoshi; Nishijima, Suguru; Kojima, Yasushi; Hisada, Yuya; Imbe, Koh; Miyoshi-Akiyama, Tohru; Suda, Wataru; Kimura, Moto; Aoki, Ryo; Sekine, Katsunori; Ohsugi, Mitsuru; Miki, Kuniko; Osawa, Tsuyoshi; Ueki, Kohjiro; Oka, Shinichi; Mizokami, Masashi; Kartal, Ece; Schmidt, Thomas S. B.; Molina-Montes, Esther; Estudillo, Lidia; Malats, Nuria; Trebicka, Jonel; Kersting, Stephan; Langheinrich, Melanie; Bork, Peer; Uemura, Naomi; Itoi, Takao; Kawai, Takashi

Landscape of mobile genetic elements and their antibiotic resistance cargo in prokaryotic genomes

NUCLEIC ACIDS RESEARCH

IF13.1

2022-03-22

OAAI

Khedkar, Supriya; Smyshlyaev, Georgy; Letunic, Ivica; Maistrenko, Oleksandr M.; Coelho, Luis Pedro; Orakov, Askarbek; Forslund, Sofia K.; Hildebrand, Falk; Luetge, Mechthild; Schmidt, Thomas S. B.; Barabas, Orsolya; Bork, Peer

Microbiome and metabolome features of the cardiometabolic disease spectrum 心脏代谢疾病谱的微生物组和代谢组特征

NATURE MEDICINE

IF50

2022-02-17

125

OAAI

Fromentin, Sebastien; Forslund, Sofia K.; Chechi, Kanta; Aron-Wisnewsky, Judith; Chakaroun, Rima; Nielsen, Trine; Tremaroli, Valentina; Ji, Boyang; Prifti, Edi; Myridakis, Antonis; Chilloux, Julien; Andrikopoulos, Petros; Fan, Yong; Olanipekun, Michael T.; Alves, Renato; Adiouch, Solia; Bar, Noam; Talmor-Barkan, Yeela; Belda, Eugeni; Caesar, Robert; Coelho, Luis Pedro; Falony, Gwen; Fellahi, Soraya; Galan, Pilar; Galleron, Nathalie; Helft, Gerard; Hoyles, Lesley; Isnard, Richard; Le Chatelier, Emmanuelle; Julienne, Hanna; Olsson, Lisa; Pedersen, Helle Krogh; Pons, Nicolas; Quinquis, Benoit; Rouault, Christine; Roume, Hugo; Salem, Joe-Elie; Schmidt, Thomas S. B.; Vieira-Silva, Sara; Li, Peishun; Zimmermann-Kogadeeva, Maria; Lewinter, Christian; Sondertoft, Nadja B.; Hansen, Tue H.; Gauguier, Dominique; Gotze, Jens Peter; Kober, Lars; Kornowski, Ran; Vestergaard, Henrik; Hansen, Torben; Zucker, Jean-Daniel; Hercberg, Serge; Letunic, Ivica; Backhed, Fredrik; Oppert, Jean-Michel; Nielsen, Jens; Raes, Jeroen; Bork, Peer; Stumvoll, Michael; Segal, Eran; Clement, Karine; Dumas, Marc-Emmanuel; Ehrlich, S. Dusko; Pedersen, Oluf

GUNC: detection of chimerism and contamination in prokaryotic genomes GUNC: 检测原核基因组中的嵌合性和污染

GENOME BIOLOGY

IF9.4

2021-06-13

111

OAAI

Orakov, Askarbek; Fullam, Anthony; Coelho, Luis Pedro; Khedkar, Supriya; Szklarczyk, Damian; Mende, Daniel R.; Schmidt, Thomas S. B.; Bork, Peer

treeclimbR pinpoints the data-dependent resolution of hierarchical hypotheses

GENOME BIOLOGY

IF9.4

2021-05-17

OAAI

Huang, Ruizhu; Soneson, Charlotte; Germain, Pierre-Luc; Schmidt, Thomas S. B.; Von Mering, Christian; Robinson, Mark D.

Disentangling the mechanisms shaping the surface ocean microbiota 解开塑造表面海洋微生物群的机制

MICROBIOME

IF12.7

2020-04-20

173

OAAI

Logares, Ramiro; Deutschmann, Ina M.; Junger, Pedro C.; Giner, Caterina R.; Krabberod, Anders K.; Schmidt, Thomas S. B.; Rubinat-Ripoll, Laura; Mestre, Mireia; Salazar, Guillem; Ruiz-Gonzalez, Clara; Sebastian, Marta; de Vargas, Colomban; Acinas, Silvia G.; Duarte, Carlos M.; Gasol, Josep M.; Massana, Ramon

Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity

ISME JOURNAL

IF10

2020-02-11

OAAI

Maistrenko, Oleksandr M.; Mende, Daniel R.; Luetge, Mechthild; Hildebrand, Falk; Schmidt, Thomas S. B.; Li, Simone S.; Rodrigues, Joao F. Matias; von Mering, Christian; Coelho, Luis Pedro; Huerta-Cepas, Jaime; Sunagawa, Shinichi; Bork, Peer

研究方向