Takafumi N. Yamaguchi - Publications, H-index & Citations

Takafumi N. Yamaguchi

los angeles

63H指数

352论文数

3.4W被引数

收录论文 43

发表时间

Divergent evolution in bilateral prostate cancer: a case study 双侧前列腺癌的趋异进化：一个病例研究

Frontiers in Oncology

IF3.3

2026-09-11

OAAI

RH Roni Haas; RR Rong Rong Huang; AB Adam B. Weiner; YP Yash Patel; LY Lydia Y. Liu; TN Takafumi N. Yamaguchi; RA Raag Agrawal; PC Paul C. Boutros; RE Robert E. Reiter

Recurrent mechanisms of biallelic epigenetic inactivation reveal new putative tumour suppressor genes in prostate cancer 前列腺癌中双等位基因表观遗传失活的复发机制揭示了新的潜在肿瘤抑制基因

Nature Communications

IF15.7

2026-09-09

OAAI

Daria Kiriy; Francesco Favero; Clarissa Gerhäuser; Jessica Heilmann; Pavlo Lutsik; Francisco German Rodriguez Gonzalez; Alessio Locallo; Jakob Schmidt Jespersen; Andreas J. Gruber; Andre V. Olsen; Barbara Hernando; Kevin CL Cheng; Diogo Pellegrina; Geoff Macintyre; G. Steven Bova; Daniel S. Brewer; Robert G. Bristow; Mark N. Brook; Benedikt Brors; Adam Butler; Géraldine Cancel-Tassin; Niall M. Corcoran; Olivier Cussenot; Ros A. Eeles; Abraham Gihawi; Etsehiwot G. Girma; Vincent J. Gnanapragasam; Anis Hamid; Vanessa M. Hayes; Housheng Hansen He; Christopher M. Hovens; Eddie L. Imada; G. Maria Jakobsdottir; Chol-Hee Jung; Francesca Khani; Zsofia Kote-Jarai; Philippe P. Lamy; Gregory Leeman; Massimo Loda; Luigi Marchionni; Ramyar Molania; Anthony T. Papenfuss; Bernard Pope; Lucio R. Queiroz; Tobias Rausch; Brian Robinson; Atef Sahli; Karina D. Sørensen; Sebastian Uhrig; David C. Wedge; Yaobo Xu; Takafumi N. Yamaguchi; Claudio Zanettini; Colin S. Cooper; Thorsten Schlomm; Jüri Reimand; Joachim Weischenfeldt

Integrated signatures define mutational processes in prostate cancer 整合特征定义前列腺癌中的突变过程

Nature

IF48.5

2026-09-09

OAAI

Andreas J. Gruber; André V. Olsen; Barbara Hernando; Kevin C. L. Cheng; Clarissa Gerhäuser; Marina Torres; Francesco Favero; Daria Kiriy; Ángel Fernández-Sanromán; Juan Maria Roldan-Romero; Lucy Barton; Diogo Pellegrina; G. Steven Bova; Daniel S. Brewer; Mark N. Brook; Benedikt Brors; Adam Butler; Géraldine Cancel-Tassin; Niall M. Corcoran; Olivier Cussenot; Abraham Gihawi; Etsehiwot G. Girma; Vincent J. Gnanapragasam; Anis A. Hamid; Vanessa M. Hayes; Housheng Hansen He; Christopher M. Hovens; Eddie L. Imada; G. Maria Jakobsdottir; Chol-Hee Jung; Francesca Khani; Zsofia Kote-Jarai; Philippe Lamy; Gregory Leeman; Massimo Loda; Pavlo Lutsik; Luigi Marchionni; Ramyar Molania; Anthony T. Papenfuss; Bernard Pope; Lucio R. Queiroz; Tobias Rausch; Brian Robinson; Atef Sahli; Karina D. Sørensen; Takafumi N. Yamaguchi; Sebastian Uhrig; Yaobo Xu; Claudio Zanettini; Ronald Simon; Guido Sauter; Ros A. Eeles; Colin S. Cooper; Robert G. Bristow; David C. Wedge; Thorsten Schlomm; Geoff Macintyre; Jüri Reimand; Joachim Weischenfeldt

Characterization of subclonal variants in HG002 Genome in a Bottle reference material as a resource for benchmarking variant callers HG002基因组参考材料中子克隆变异体的表征，作为评估变异检测算法的资源

Cell Genomics

IF9

2026-04-01

OAAI

Daniels, Camille A.; Abdulkadir, Adetola A.; Cleveland, Megan H.; McDaniel, Jennifer H.; Jaspez, David; Rubio-Rodrnguez, Luis Alberto; Munoz-Barrera, Adrian; Lorenzo-Salazar, Jose Miguel; Flores, Carlos; Yoo, Byunggil; Sahraeian, Sayed Mohammad Ebrahim; Wang, Yina; Rossi, Massimiliano; Visvanath, Arun; Murray, Lisa; Chen, Wei-Ting; Catreux, Severine; Han, James; Mehio, Rami; Parnaby, Gavin; Carroll, Andrew; Chang, Pi-Chuan; Shafin, Kishwar; Cook, Daniel; Kolesnikov, Alexey; Brambrink, Lucas; Mootor, Mohammed Faizal Eeman; Patel, Yash; Yamaguchi, Takafumi N.; Boutros, Paul C.; Sienkiewicz, Karolina; Foox, Jonathan; Mason, Christopher E.; Lajoie, Bryan R.; Ruiz-Perez, Carlos A.; Kruglyak, Semyon; Zook, Justin M.; Olson, Nathan D.

Advancing precision health discovery in a genetically diverse health system 在基因多样化的健康系统中推进精准健康发现

Cell

IF42.5

2026-03-27

OAAI

Roni Haas; Michael P. Margolis; Angela Wei; Takafumi N. Yamaguchi; Jeffrey Feng; Thai Tran; Veronica Tozzo; Katelyn J. Queen; Mohammed Faizal Eeman Mootor; Vishakha Patil; Michael E. Broudy; Paul Tung; Shafiul Alam; Danielle B. Martinez; Yash Patel; Christa Caggiano; Nicole Zeltser; Rupert Hugh-White; Jaron Arbet; Ruhollah Shemirani

Metapipeline-DNA: A comprehensive germline and somatic genomics Nextflow pipeline Metapipeline-DNA：一个全面的体细胞和生殖系基因组学Nextflow流程

Cell Reports Methods

IF4.5

2026-03-17

OAAI

Yash Patel; Chenghao Zhu; Takafumi N. Yamaguchi; Nicholas K. Wang; Nicholas Wiltsie; Nicole Zeltser; Alfredo E. Gonzalez; Helena K. Winata; Yu Pan; Mohammed Faizal Eeman Mootor; Timothy Sanders; Sorel T. Fitz-Gibbon; Cyriac Kandoth; Julie Livingstone; Lydia Y. Liu; Benjamin Carlin; Aaron Holmes; Jieun Oh; John Sahrmann; Shu Tao

Author Correction: Oncolytic DNX-2401 virotherapy plus pembrolizumab in recurrent glioblastoma: a phase 1/2 trial 作者更正: 溶瘤DNX-2401病毒疗法联合pembrolizumab治疗复发性胶质母细胞瘤: 1/2期试验

Nature Medicine

IF50

2025-07-21

OAAI

Farshad Nassiri; Vikas Patil; Leeor S. Yefet; Olivia Singh; Jeff Liu; Rachel M. A. Dang; Takafumi N. Yamaguchi; Mariza Daras; Timothy F. Cloughesy; Howard Colman; Priya U. Kumthekar; Clark C. Chen; Robert Aiken; Morris D. Groves; Shirley S. Ong; Rohan Ramakrishna; Michael A. Vogelbaum; Simon Khagi; Thomas Kaley; Jason M. Melear; David M. Peereboom; Analiz Rodriguez; Maxim Yankelevich; Suresh G. Nair; Vinay K. Puduvalli; Kenneth Aldape; Andrew Gao; Álvaro López-Janeiro; Carlos E. de Andrea; Marta M. Alonso; Paul Boutros; Joan Robbins; Warren P. Mason; Adam M. Sonabend; Roger Stupp; Juan Fueyo; Candelaria Gomez-Manzano; Frederick F. Lang; Gelareh Zadeh

Identification of non-canonical peptides with moPepGen 使用moPepGen鉴定非经典肽段

Nature Biotechnology

IF41.7

2025-06-16

OAAI

Chenghao Zhu; Lydia Y. Liu; Annie Ha; Takafumi N. Yamaguchi; Helen Zhu; Rupert Hugh-White; Julie Livingstone; Yash Patel; Thomas Kislinger; Paul C. Boutros

Colibactin Exerts Androgen-dependent and -independent Effects on Prostate Cancer Colibactin 对前列腺癌具有依赖性和非依赖性雄激素效应。

European Urology Oncology

IF9.3

2024-11-01

OAAI

Raag Agrawal; Sarah Al-Hiyari; Rupert Hugh-White; Robert Hromas; Yash Patel; Elizabeth A. Williamson; Mohammed F.E. Mootor; Alfredo Gonzalez; Jianmin Fu; Roni Haas; Madison Jordan; Brian L. Wickes; Ghouse Mohammed; Mao Tian; Molly J. Doris; Christian Jobin; Kevin M. Wernke; Yu Pan; Takafumi N. Yamaguchi; Seth B. Herzon; Paul C. Boutros; Michael A. Liss

Upgrading of Grade Group 1 Prostate Cancer at Prostatectomy: Germline Risk Factors in a Prospective Cohort 前列腺切除术中1级组前列腺癌的升级: 前瞻性队列中的种系风险因素

CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

IF3.4

2024-08-19

OAAI

Liss, Michael A.; Zeltser, Nicole; Zheng, Yingye; Lopez, Camden; Liu, Menghan; Patel, Yash; Yamaguchi, Takafumi N.; Eng, Stefan E.; Tian, Mao; Semmes, Oliver J.; Lin, Daniel W.; Brooks, James D.; Wei, John T.; Klein, Eric A.; Tewari, Ashutosh K.; Mosquera, Juan Miguel; Khani, Francesca; Robinson, Brian D.; Aasad, Muhammad; Troyer, Dean A.; Kagan, Jacob; Sanda, Martin G.; Thompson, Ian M.; Boutros, Paul C.; Leach, Robin J.

Persistence and dynamics of mutation, selection, and epistasis during the somatic evolution of low-risk, high-risk, and metastatic prostate cancer

CANCER RESEARCH

IF16.6

2024-03-22

PREAI

Rajaei, Moein; Yang, Alexander; Cross, Christopher N.; Fisk, J. Nick; Perry, Elizabeth B.; Mandell, Jeffrey D.; Gaffney, Stephen G.; Yamaguchi, Takafumi N.; Livingstone, Julie; Cannataro, Vincent L.; Humphrey, Peter; Costa, Jose; Boutros, Paul C.; Townsend, Jeffrey P.

The genomic and evolutionary landscapes of anaplastic thyroid carcinoma 间变性甲状腺癌的基因组和进化景观

CELL REPORTS

IF6.9

2024-03-01

OAAI

Zeng, Peter Y. F.; Prokopec, Stephenie D.; Lai, Stephen Y.; Pinto, Nicole; Chan-Seng-Yue, Michelle A.; Clifton-Bligh, Roderick; Williams, Michelle D.; Howlett, Christopher J.; Plantinga, Paul; Cecchini, Matthew J.; Lam, Alfred K.; Siddiqui, Iram; Wang, Jianxin; Sun, Ren X.; Watson, John D.; Korah, Reju; Carling, Tobias; Agrawal, Nishant; Cipriani, Nicole; Ball, Douglas; Nelkin, Barry; Rooper, Lisa M.; Bishop, Justin A.; Garnis, Cathie; Berean, Ken; Nicolson, Norman G.; Weinberger, Paul; Henderson, Ying C.; Lalansingh, Christopher M.; Tian, Mao; Yamaguchi, Takafumi N.; Livingstone, Julie; Salcedo, Adriana; Patel, Krupal; Vizeacoumar, Frederick; Datti, Alessandro; Xi, Liu; Nikiforov, Yuri E.; Smallridge, Robert; Copland, John A.; Marlow, Laura A.; Hyrcza, Martin D.; Delbridge, Leigh; Sidhu, Stan; Sywak, Mark; Robinson, Bruce; Fung, Kevin; Ghasemi, Farhad; Kwan, Keith; MacNeil, S. Danielle; Mendez, Adrian; Palma, David A.; Khan, Mohammed I.; Shaikh, Mushfiq; Ruicci, Kara M.; Wehrli, Bret; Winquist, Eric; Yoo, John; Mymryk, Joe S.; Rocco, James W.; Wheeler, David; Scherer, Steve; Giordano, Thomas J.; Barrett, John W.; Faquin, William C.; Gill, Anthony J.; Clayman, Gary; Boutros, Paul C.; Nichols, Anthony C.

Oncolytic DNX-2401 virotherapy plus pembrolizumab in recurrent glioblastoma: a phase 1/2 trial

NATURE MEDICINE

IF50

2023-05-15

113

OAAI

Nassiri, Farshad; Patil, Vikas; Yefet, Leeor S.; Singh, Olivia; Liu, Jeff; Dang, Rachel M. A.; Yamaguchi, Takafumi N.; Daras, Mariza; Cloughesy, Timothy F.; Colman, Howard; Kumthekar, Priya U.; Chen, Clark C.; Aiken, Robert; Groves, Morris D.; Ong, Shirley S.; Ramakrishna, Rohan; Vogelbaum, Michael A.; Khagi, Simon; Kaley, Thomas; Melear, Jason M.; Peereboom, David M.; Rodriguez, Analiz; Yankelevich, Maxim; Nair, Suresh G.; Puduvalli, Vinay K.; Aldape, Kenneth; Gao, Andrew; Lopez-Janeiro, Alvaro; de Andrea, Carlos E.; Alonso, Marta M.; Boutros, Paul; Robbins, Joan; Mason, Warren P.; Sonabend, Adam M.; Stupp, Roger; Fueyo, Juan; Gomez-Manzano, Candelaria; Lang, Frederick F.; Zadeh, Gelareh

Snapshot! Exploring sample diversity of sarcoma cancers across common data repositories 快照!探索常见数据存储库中肉瘤癌症的样本多样性

CANCER RESEARCH

IF16.6

2023-04-04

PREAI

Gonzalez, Alfredo Enrique; Patel, Yash; Zhu, Chenghao; Yamaguchi, Takafumi N.; Tian, Mao; Hiyari, Sarah; Shihabi, Ahmad A.; Eng, Stefan; Winata, Helena; Arbert, Jaron; Beshlikyan, Arpi; Davarifar, Ardalan; Soragni, Alice; Boutros, Paul C.

Evaluating biomarker potential of germline genomic factors for predicting clinical outcomes in prostate cancer

CANCER RESEARCH

IF16.6

2023-04-04

PREAI

Zeltser, Nicole; Houlahan, Kathleen E.; Al-Hiyari, Sarah M.; Eng, Stefan E.; Patel, Yash; Yamaguchi, Takafumi N.; Tao, Shu; Huang, Rong Rong; Reiter, Robert E.; Ye, Huihui; Kinnaird, Adam S.; Boutros, Paul C.

Germline structural variants shape prostate cancer clinical and molecular evolution

CANCER RESEARCH

IF16.6

2023-04-04

PREAI

Wang, Nicholas K.; Rouette, Alexandre; Houlahan, Kathleen E.; Yamaguchi, Takafumi N.; Livingstone, Julie; Jung, Chol-Hee; Georgeson, Peter; Fraser, Michael; Shiah, Yu-Jia; Yao, Cindy Q.; Huang, Vincent; Fox, Natalie S.; Kurganovs, Natalie; Kasaian, Katayoon; Sabelnykova, Veronica Y.; Jayalath, Jay; Weke, Kenneth; Zhu, Helen; van der Kwast, Theodorus; Papenfuss, Tony; He, Housheng H.; Corcoran, Niall M.; Bristow, Robert G.; Zlotta, Alexandre R.; Hovens, Christopher; Boutros, Paul C.

A polygenic two-hit hypothesis for prostate cancer

JNCI-JOURNAL OF THE NATIONAL CANCER INSTITUTE

IF7.2

2023-01-05

OAAI

Houlahan, Kathleen E.; Livingstone, Julie; Fox, Natalie S.; Kurganovs, Natalie; Zhu, Helen; Sietsma Penington, Jocelyn; Jung, Chol-Hee; Yamaguchi, Takafumi N.; Heisler, Lawrence E.; Jovelin, Richard; Costello, Anthony J.; Pope, Bernard J.; Kishan, Amar U.; Corcoran, Niall M.; Bristow, Robert G.; Waszak, Sebastian M.; Weischenfeldt, Joachim; He, Housheng H.; Hung, Rayjean J.; Hovens, Christopher M.; Boutros, Paul C.

Virally programmed extracellular vesicles sensitize cancer cells to oncolytic virus and small molecule therapy 病毒程序化的细胞外囊泡使癌细胞对溶瘤病毒和小分子疗法敏感

NATURE COMMUNICATIONS

IF15.7

2022-04-07

OAAI

Wedge, Marie-Eve; Jennings, Victoria A.; Crupi, Mathieu J. F.; Poutou, Joanna; Jamieson, Taylor; Pelin, Adrian; Pugliese, Giuseppe; de Souza, Christiano Tanese; Petryk, Julia; Laight, Brian J.; Boileau, Meaghan; Taha, Zaid; Alluqmani, Nouf; McKay, Hayley E.; Pikor, Larissa; Khan, Sarwat Tahsin; Azad, Taha; Rezaei, Reza; Austin, Bradley; He, Xiaohong; Mansfield, David; Rose, Elaine; Brown, Emily E. F.; Crawford, Natalie; Alkayyal, Almohanad; Surendran, Abera; Singaravelu, Ragunath; Roy, Dominic G.; Migneco, Gemma; McSweeney, Benjamin; Cottee, Mary Lynn; Jacobus, Egon J.; Keller, Brian A.; Yamaguchi, Takafumi N.; Boutros, Paul C.; Geoffrion, Michele; Rayner, Katey J.; Chatterjee, Avijit; Auer, Rebecca C.; Diallo, Jean-Simon; Gibbings, Derrick; tenOever, Benjamin R.; Melcher, Alan; Bell, John C.; Ilkow, Carolina S.

The telomere length landscape of prostate cancer 前列腺癌的端粒长度景观

NATURE COMMUNICATIONS

IF15.7

2021-11-25

OAAI

Livingstone, Julie; Shiah, Yu-Jia; Yamaguchi, Takafumi N.; Heisler, Lawrence E.; Huang, Vincent; Lesurf, Robert; Gebo, Tsumugi; Carlin, Benjamin; Eng, Stefan; Drysdale, Erik; Green, Jeffrey; van der Kwast, Theodorus; Bristow, Robert G.; Fraser, Michael; Boutros, Paul C.

Qualitative analysis of actual Standard for Exchange of Nonclinical Data (SEND) datasets for Data Domains: Proposition from Japan Pharmaceutical Manufacturers Association SEND Taskforce Team on standardization of nonclinical data

REGULATORY TOXICOLOGY AND PHARMACOLOGY

IF3.5

2021-06-01

PREAI

Sato, Gen; Matsumoto, Izumi; Watanabe, Mayumi; Kinomoto, Toshiko; Nakajima, Mikio; Yamamoto, Masakatsu; Inoue, Yuki; Kobayashi, Keita; Tanaharu, Takashi; Kiya, Akinori; Yamaguchi, Takafumi; Hayashi, Hitomi; Motoyama, Keiko; Suzuki, Mutsumi; Watanabe, Kazuto

研究方向