Nathan C. Sheffield - Publications, H-index & Citations

Nathan C. Sheffield

University of Virginia

33H指数

154论文数

1.3W被引数

收录论文 49

发表时间

Taming the reference genome jungle: the refget sequence collection standard 驯服参考基因组丛林：refget序列集合标准

Bioinformatics

IF5.4

2026-07-31

OAAI

Donald R Campbell, Jr; Timothee Cezard; Sveinung Gundersen; Andrew D Yates; Robert M Davies; John Marshall; Sang-Hoon Park; Alex H Wagner; Michael I Love; Reggan Thomas; Oliver Hofmann; Nathan C Sheffield; null

Automated biomedical hypothesis generation with time-aware hypergraph contrastive learning 基于时间感知超图对比学习的自动化生物医学假设生成

Knowledge and Information Systems

IF3.1

2026-05-17

OAAI

Amir Hassan Shariatmadari; Sikun Guo; Nathan C. Sheffield; Aidong Zhang; Kishlay Jha

ConceptDrift: leveraging spatial, temporal and semantic evolution of biomedical concepts for hypothesis generation ConceptDrift：利用生物医学概念的空间、时间和语义演变进行假设生成

BIOINFORMATICS

IF5.4

2025-11-01

OAAI

Shariatmadari, Amir Hassan; Jafari, Alireza; Guo, Sikun; Srinivasan, Sneha; Sheffield, Nathan C.; Zhang, Aidong; Jha, Kishlay

The reninness score: integrative analysis of multi-omic data to define renin cell identity.

HYPERTENSION

IF8.2

2024-09-01

PREAI

Xue, Bingjie; Medrano, Silvia; Smith, Jason; Martini, Alexandre; Sequeira, Maria Luisa; Sheffield, Nathan; Gomez, Ariel

Inhibition of Renin Expression Is Regulated by an Epigenetic Switch From an Active to a Poised State

HYPERTENSION

IF8.2

2024-09-01

PREAI

Smith, Jason P.; Paxton, Robert; Medrano, Silvia; Sheffield, Nathan C.; Sequeira-Lopez, Maria Luisa S.; Gomez, R. Ariel

Methods for constructing and evaluating consensus genomic interval sets

NUCLEIC ACIDS RESEARCH

IF13.1

2024-08-24

OAAI

Rymuza, Julia; Sun, Yuchen; Zheng, Guangtao; LeRoy, Nathan J.; Murach, Maria; Phan, Neil; Zhang, Aidong; Sheffield, Nathan C.

Methods for evaluating unsupervised vector representations of genomic regions

genomics proteomics bioinformatics

IF2.8

2024-08-10

OAAI

Zheng, Guangtao; Rymuza, Julia; Gharavi, Erfaneh; Leroy, Nathan J.; Zhang, Aidong; Sheffield, Nathan C.

PEPhub: a database, web interface, and API for editing, sharing, and validating biological sample metadata

GIGASCIENCE

IF3.9

2024-07-11

OAAI

LeRoy, Nathan J.; Khoroshevskyi, Oleksandr; O'Brien, Aaron; Stepien, Rafal; Arslan, Alip; Sheffield, Nathan C.

Fast clustering and cell-type annotation of scATAC data using pre-trained embeddings

genomics proteomics bioinformatics

IF2.8

2024-07-05

OAAI

LeRoy, Nathan J.; Smith, Jason P.; Zheng, Guangtao; Rymuza, Julia; Gharavi, Erfaneh; Brown, Donald E.; Zhang, Aidong; Sheffield, Nathan C.

Joint Representation Learning for Retrieval and Annotation of Genomic Interval Sets

BIOENGINEERING-BASEL

IF3.7

2024-03-08

OAAI

Gharavi, Erfaneh; Leroy, Nathan J.; Zheng, Guangtao; Zhang, Aidong; Brown, Donald E.; Sheffield, Nathan C.

Integrative single-cell meta-analysis reveals disease-relevant vascular cell states and markers in human atherosclerosis

CELL REPORTS

IF6.9

2023-11-01

OAAI

Mosquera, Jose Verdezoto; Auguste, Gaelle; Wong, Doris; Turner, Adam W.; Hodonsky, Chani J.; Alvarez-Yela, Astrid Catalina; Song, Yipei; Cheng, Qi; Cardenas, Christian L. Lino; Theofilatos, Konstantinos; Bos, Maxime; Kavousi, Maryam; Peyser, Patricia A.; Mayr, Manuel; Kovacic, Jason C.; Bjorkegren, Johan L. M.; Malhotra, Rajeev; Stukenberg, P. Todd; Finn, Aloke, V; van der Laan, Sander W.; Zang, Chongzhi; Sheffield, Nathan C.; Miller, Clint L.

The Reninness Score: Integrative Analysis Of Multi-omic Data To Define Renin Cell Identity

HYPERTENSION

IF8.2

2023-09-01

PREAI

Xue, Bingjie; Medrano, Silvia; Martini, Alexandre G.; Smith, Jason; Sheffield, Nathan; Gomez, Roberto A.; Lopez, Maria Luisa S. Sequeira

Renin Cell Development: Insights From Chromatin Accessibility and Single-Cell Transcriptomics

CIRCULATION RESEARCH

IF16.2

2023-08-04

OAAI

Martini, Alexandre G.; Smith, Jason P.; Medrano, Silvia; Finer, Gal; Sheffield, Nathan C.; Sequeira-Lopez, Maria Luisa S.; Gomez, R. Ariel

Integrative Single-cell Meta-analysis Reveals Diseaserelevant Vascular Cell States and Markers in Human Atherosclerosis

ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY

IF7.4

2023-05-01

PREAI

Mosquera, Jose E. Verdezoto; Wong, Doris; Auguste, Gaelle; Turner, Adam; Hodonsky, Chani J.; Cardenas, Christian L. Lino; Theofilatos, Konstantinos; Bos, Maxime; Kavousi, Maryam; Peyser, Patricia R.; Mayr, Manuel; Kovacic, Jason; Bjorkegren, Johan; Malhotra, Rajeev; van der Laan, Sander; Zang, Chongzhi; Sheffield, Nathan; Miller, Clint

Specific Chromatin Configurations Across The Genome Determine The Renin Cell Identity

HYPERTENSION

IF8.2

2022-09-01

PREAI

Xue, Bingjie; Medrano, Silvia; Smith, Jaosn; Martini, Alexandre G.; Sheffield, Nathan; Sequeira-Lopez, Maria Luisa; Gomez, Roberto A.

Epigenetic Determinants Of Renin Cell Identity

HYPERTENSION

IF8.2

2022-09-01

PREAI

Smith, Jason P.; Martini, Alexandre G.; Sheffield, Nathan; Lopez, Maria Sequeira; Gomez, Roberto A.

Single-cell transcriptome and accessible chromatin dynamics during endocrine pancreas development 内分泌胰腺发育过程中的单细胞转录组和可及染色质动力学

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2022-06-22

OAAI

Duvall, Eliza; Benitez, Cecil M.; Tellez, Krissie; Enge, Martin; Pauerstein, Philip T.; Li, Lingyu; Baek, Songjoon; Quake, Stephen R.; Smith, Jason P.; Sheffield, Nathan C.; Kim, Seung K.; Arda, H. Efsun

GenomicDistributions: fast analysis of genomic intervals with Bioconductor 基因组分布: 使用Bioconductor快速分析基因组间隔

BMC GENOMICS

IF3.7

2022-04-12

OAAI

Kupkova, Kristyna; Mosquera, Jose Verdezoto; Smith, Jason P.; Stolarczyk, Michal; Danehy, Tessa L.; Lawson, John T.; Xue, Bingjie; Stubbs, John T.; LeRoy, Nathan; Sheffield, Nathan C.

Detecting molecular subtypes from multi-omics datasets using SUMO

CELL REPORTS METHODS

IF4.5

2022-01-01

OAAI

Sienkiewicz, Karolina; Chen, Jinyu; Chatrath, Ajay; Lawson, John T.; Sheffield, Nathan C.; Zhang, Louxin; Ratan, Aakrosh

Linking big biomedical datasets to modular analysis with Portable Encapsulated Projects

GIGASCIENCE

IF3.9

2021-12-06

OAAI

Sheffield, Nathan C.; Stolarczyk, Michal; Reuter, Vincent P.; Rendeiro, Andre F.

研究方向