Butler, Daniel; Mozsary, Christopher; Meydan, Cem; Foox, Jonathan; Rosiene, Joel; Shaiber, Alon; Danko, David; Afshinnekoo, Ebrahim; MacKay, Matthew; Sedlazeck, Fritz J.; Ivanov, Nikolay A.; Sierra, Maria; Pohle, Diana; Zietz, Michael; Gisladottir, Undina; Ramlall, Vijendra; Sholle, Evan T.; Schenck, Edward J.; Westover, Craig D.; Hassan, Ciaran; Ryon, Krista; Young, Benjamin; Bhattacharya, Chandrima; Ng, Dianna L.; Granados, Andrea C.; Santos, Yale A.; Servellita, Venice; Federman, Scot; Ruggiero, Phyllis; Fungtammasan, Arkarachai; Chin, Chen-Shan; Pearson, Nathaniel M.; Langhorst, Bradley W.; Tanner, Nathan A.; Kim, Youngmi; Reeves, Jason W.; Hether, Tyler D.; Warren, Sarah E.; Bailey, Michael; Gawrys, Justyna; Meleshko, Dmitry; Xu, Dong; Couto-Rodriguez, Mara; Nagy-Szakal, Dorottya; Barrows, Joseph; Wells, Heather; O'Hara, Niamh B.; Rosenfeld, Jeffrey A.; Chen, Ying; Steel, Peter A. D.; Shemesh, Amos J.; Xiang, Jenny; Thierry-Mieg, Jean; Thierry-Mieg, Danielle; Iftner, Angelika; Bezdan, Daniela; Sanchez, Elizabeth; Campion, Thomas R., Jr.; Sipley, John; Cong, Lin; Craney, Arryn; Velu, Priya; Melnick, Ari M.; Shapira, Sagi; Hajirasouliha, Iman; Borczuk, Alain; Iftner, Thomas; Salvatore, Mirella; Loda, Massimo; Westblade, Lars F.; Cushing, Melissa; Wu, Shixiu; Levy, Shawn; Chiu, Charles; Schwartz, Robert E.; Tatonetti, Nicholas; Rennert, Hanna; Imielinski, Marcin; Mason, Christopher E.

A diagnostic host response biosignature for COVID-19 from RNA profiling of nasal swabs and blood

SCIENCE ADVANCES

IF12.5

2021-02-0566

OAAI

Ng, Dianna L.; Granados, Andrea C.; Santos, Yale A.; Servellita, Venice; Goldgof, Gregory M.; Meydan, Cem; Sotomayor-Gonzalez, Alicia; Levine, Andrew G.; Balcerek, Joanna; Han, Lucy M.; Akagi, Naomi; Truong, Kent; Neumann, Neil M.; Nguyen, David N.; Bapat, Sagar P.; Cheng, Jing; Sanchez-San Martin, Claudia; Federman, Scot; Foox, Jonathan; Gopez, Allan; Li, Tony; Chan, Ray; Chu, Cynthia S.; Wabl, Chiara A.; Gliwa, Amelia S.; Reyes, Kevin; Pan, Chao-Yang; Guevara, Hugo; Wadford, Debra; Miller, Steve; Mason, Christopher E.; Chiu, Charles Y.

Timely intervention and control of a novel coronavirus (COVID-19) outbreak at a large skilled nursing facility-San Francisco, California, 2020

INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY

IF3

2020-12-1416

OAAI

Karmarkar, Ellora N.; Blanco, Irin; Amornkul, Pauli N.; DuBois, Amie; Deng, Xianding; Moonan, Patrick K.; Rubenstein, Beth L.; Miller, David A.; Kennedy, Idamae; Yu, Jennifer; Dauterman, Justin P.; Ongpin, Melissa; Hathaway, Wilmie; Hoo, Lisa; Trammell, Stephanie; Dosunmu, Ejovwoke F.; Yu, Guixia; Khwaja, Zenith; Lu, Wendy; Talai, Nawzaneen Z.; Jain, Seema; Louie, Janice K.; Philip, Susan S.; Federman, Scot; Masinde, Godfred; Wadford, Debra A.; Bobba, Naveena; Stoltey, Juliet; Smith, Adrian; Epson, Erin; Chiu, Charles Y.; Bennett, Ayanna S.; Vasquez, Amber M.; Williams, Troy

Rapid pathogen detection by metagenomic next-generation sequencing of infected body fluids

通过宏基因组下一代测序对感染体液进行快速病原体检测

NATURE MEDICINE

IF50

2020-11-09414

OAAI

Clinical features, diagnostics, and outcomes of patients presenting with acute respiratory illness: A retrospective cohort study of patients with and without COVID-19

ECLINICALMEDICINE

IF10

2020-10-0149

OAAI

Shah, Sachin J.; Barish, Peter N.; Prasad, Priya A.; Kistler, Amy; Neff, Norma; Kamm, Jack; Li, Lucy M.; Chiu, Charles Y.; Babik, Jennifer M.; Fang, Margaret C.; Abe-Jones, Yumiko; Alipanah, Narges; Alvarez, Francisco N.; Botvinnik, Olga Borisovna; Castaneda, Gloria; Dadasovich, Rand M.; Davis, Jennifer; Deng, Xianding; DeRisi, Joseph L.; Detweiler, Angela M.; Federman, Scot; Haliburton, John; Hao, Samantha; Kerkhoff, Andrew D.; Kumar, G. Renuka; Malcolm, Katherine B.; Mann, Sabrina A.; Martinez, Sandra; Mary, Rupa K.; Mick, Eran; Mwakibete, Lusajo; Najafi, Nader; Peluso, Michael J.; Phelps, Maira; Pisco, Angela Oliveira; Ratnasiri, Kalani; Rubio, Luis A.; Sellas, Anna; Sherwood, Kyla D.; Sheu, Jonathan; Spottiswoode, Natasha; Tan, Michelle; Yu, Guixia; Kangelaris, Kirsten Neudoerffer; Langelier, Charles

Metagenomic sequencing of stool samples in Bangladeshi infants: virome association with poliovirus shedding after oral poliovirus vaccination

SCIENTIFIC REPORTS

IF3.9

2020-09-217

OAAI

Associations of Early COVID-19 Cases in San Francisco With Domestic and International Travel

CLINICAL INFECTIOUS DISEASES

IF7.3

2020-05-218

OAAI

Metagenomic Next-Generation Sequencing of the 2014 Ebola Virus Disease Outbreak in the Democratic Republic of the Congo

刚果民主共和国2014埃博拉病毒疾病暴发的宏基因组下一代测序

JOURNAL OF CLINICAL MICROBIOLOGY

IF5.4

2019-09-0123

OAAI

Clinical Metagenomic Sequencing for Diagnosis of Meningitis and Encephalitis

临床宏基因组测序诊断脑膜炎和脑炎

NEW ENGLAND JOURNAL OF MEDICINE

IF78.5

2019-06-13682

OAAI

Wilson, M. R.; Sample, H. A.; Zorn, K. C.; Arevalo, S.; Yu, G.; Neuhaus, J.; Federman, S.; Stryke, D.; Briggs, B.; Langelier, C.; Berger, A.; Douglas, V.; Josephson, S. A.; Chow, F. C.; Fulton, B. D.; DeRisi, J. L.; Gelfand, J. M.; Naccache, S. N.; Bender, J.; Bard, J. Dien; Murkey, J.; Carlson, M.; Vespa, P. M.; Vijayan, T.; Allyn, P. R.; Campeau, S.; Humphries, R. M.; Klausner, J. D.; Ganzon, C. D.; Memar, F.; Ocampo, N. A.; Zimmermann, L. L.; Cohen, S. H.; Polage, C. R.; DeBiasi, R. L.; Haller, B.; Dallas, R.; Maron, G.; Hayden, R.; Messacar, K.; Dominguez, S. R.; Miller, S.; Chiu, C. Y.

Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid

GENOME RESEARCH

IF5.5

2019-04-16414

OAAI

Identification of high-risk human papillomavirus and Rb/E2F pathway genomic alterations in mutually exclusive subsets of colorectal neuroendocrine carcinoma

MODERN PATHOLOGY

IF5.5

2019-02-0151

OAAI

Polyoma virus-associated carcinomas of the urologic tract: a clinicopathologic and molecular study

泌尿道多瘤病毒相关癌: 临床病理和分子研究