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Charlotte Soneson

Friedrich Miescher Institute for Biomedical Research

47H指数
219论文数
2.1W被引数
收录论文 52
发表时间
An in vitro menstrual cycle using organoids captures epithelial cell transitions during menstruation and regeneration of the human endometrium利用类器官构建的体外月经周期可捕获月经期间及子宫内膜再生过程中的上皮细胞转换
err2026-04-28
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errKonstantina Nikolakopoulou; Weand Ybañez; Lhéanna Klaeylé; Lisa Frugoli; Tereza Cindrova-Davies; Hans-Rudolf Hotz; Charlotte Soneson; Margherita Yayoi Turco
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Rbm8a deficiency causes hematopoietic defects by modulating Wnt/PCP signalingRbm8a缺陷通过调节Wnt/PCP信号通路导致造血缺陷
err2025-09-02
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errAgnese Kocere; Elena Chiavacci; Charlotte Soneson; Seth T. Jacobson; Emma N. Harrison; Kevin Manuel Méndez-Acevedo; Jacalyn S. MacGowan; Harrison H. Wells; Max S. Hiltabidle; Azhwar Raghunath; Jordan A. Shavit; Daniela Panáková; Margot L.K. Williams; Mark D. Robinson; Christian Mosimann; Alexa Burger
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A comprehensive Schizosaccharomyces pombe atlas of physical transcription factor interactions with proteins and chromatin一份关于裂殖酵母 *Schizosaccharomyces pombe* 物理转录因子与蛋白质及染色质相互作用的综合图谱
err2025-02-01
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errSkribbe, Merle; Soneson, Charlotte; Stadler, Michael B.; Schwaiger, Michaela; Sreechakram, Vishnu N. Suma; Iesmantavicius, Vytautas; Hess, Daniel; Moreno, Eliza Pandini Figueiredo; Braun, Sigurd; Seebacher, Jan; Smallwood, Sebastien A.; Buhler, Marc
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Deep quantification of substrate turnover defines protease subsite cooperativity
err2024-10-28
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errGudipati, Rajani Kanth; Gaidatzis, Dimos; Seebacher, Jan; Muehlhaeusser, Sandra; Kempf, Georg; Cavadini, Simone; Hess, Daniel; Soneson, Charlotte; Grosshans, Helge
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The tidyomics ecosystem: enhancing omic data analyses
err2024-06-14
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PREAI
errHutchison, William J.; Keyes, Timothy J.; Crowell, Helena L.; Serizay, Jacques; Soneson, Charlotte; Davis, Eric S.; Sato, Noriaki; Moses, Lambda; Tarlinton, Boyd; Nahid, Abdullah A.; Kosmac, Miha; Clayssen, Quentin; Yuan, Victor; Mu, Wancen; Park, Ji-Eun; Mamede, Izabela; Ryu, Min Hyung; Axisa, Pierre-Paul; Paiz, Paulina; Poon, Chi-Lam; Tang, Ming; Gottardo, Raphael; Morgan, Martin; Lee, Stuart; Lawrence, Michael; Hicks, Stephanie C.; Nolan, Garry P.; Davis, Kara L.; Papenfuss, Anthony T.; Love, Michael I.; Mangiola, Stefano
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Convergence of multiple RNA-silencing pathways on GW182/TNRC6GW182/TNRC6上多种RNA沉默途径的趋同
err2023-07-01
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errWelte, Thomas; Goulois, Alison; Stadler, Michael B.; Hess, Daniel; Soneson, Charlotte; Neagu, Anca; Azzi, Chiara; Wisser, Marlena J.; Seebacher, Jan; Schmidt, Isabel; Estoppey, David; Nigsch, Florian; Reece-Hoyes, John; Hoepfner, Dominic; Grosshans, Helge
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mutscan-a flexible R package for efficient end-to-end analysis of multiplexed assays of variant effect data
err2023-06-01
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errSoneson, Charlotte; Bendel, Alexandra M. M.; Diss, Guillaume; Stadler, Michael B. B.
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Conserved stromal-immune cell circuits secure B cell homeostasis and function
err2023-05-18
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errLutge, Mechthild; De Martin, Angelina; Gil-Cruz, Cristina; Perez-Shibayama, Christian; Stanossek, Yves; Onder, Lucas; Cheng, Hung-Wei; Kurz, Lisa; Cadosch, Nadine; Soneson, Charlotte; Robinson, Mark D.; Stoeckli, Sandro J.; Ludewig, Burkhard; Pikor, Natalia B.
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Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability
err2023-05-17
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errSonrel, Anthony; Luetge, Almut; Soneson, Charlotte; Mallona, Izaskun; Germain, Pierre-Luc; Knyazev, Sergey; Gilis, Jeroen; Gerber, Reto; Seurinck, Ruth; Paul, Dominique; Sonder, Emanuel; Crowell, Helena L. L.; Fanaswala, Imran; Al-Ajami, Ahmad; Heidari, Elyas; Schmeing, Stephan; Milosavljevic, Stefan; Saeys, Yvan; Mangul, Serghei; Robinson, Mark D.
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The shaky foundations of simulating single-cell RNA sequencing data
err2023-03-29
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errCrowell, Helena L.; Leonardo, Sarah X. Morillo X.; Soneson, Charlotte; Robinson, Mark D.
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A Phylogenetic Framework to Simulate Synthetic Interspecies RNA-Seq Data
err2022-12-12
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errBastide, Paul; Soneson, Charlotte; Stern, David B.; Lespinet, Olivier; Gallopin, Melina
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Hand2 delineates mesothelium progenitors and is reactivated in mesothelioma
err2022-03-30
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errPrummel, Karin D.; Crowell, Helena L.; Nieuwenhuize, Susan; Brombacher, Eline C.; Daetwyler, Stephan; Soneson, Charlotte; Kresoja-Rakic, Jelena; Ronner, Manuel; Kocere, Agnese; Ernst, Alexander; Labbaf, Zahra; Clouthier, David E.; Firulli, Anthony B.; Sanchez-Iranzo, Hector; Naganathan, Sundar R.; O'Rourke, Rebecca; Raz, Erez; Mercader, Nadia; Burger, Alexa; Felley-Bosco, Emanuela; Huisken, Jan; Robinson, Mark D.; Mosimann, Christian
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Alevin-fry unlocks rapid, accurate and memory-frugal quantification of single-cell RNA-seq data
err2022-03-11
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errHe, Dongze; Zakeri, Mohsen; Sarkar, Hirak; Soneson, Charlotte; Srivastava, Avi; Patro, Rob
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treeclimbR pinpoints the data-dependent resolution of hierarchical hypotheses
err2021-05-17
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errHuang, Ruizhu; Soneson, Charlotte; Germain, Pierre-Luc; Schmidt, Thomas S. B.; Von Mering, Christian; Robinson, Mark D.
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CellMixS: quantifying and visualizing batch effects in single-cell RNA-seq data
err2021-03-23
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errLuetge, Almut; Zyprych-Walczak, Joanna; Kunzmann, Urszula Brykczynska; Crowell, Helena L.; Calini, Daniela; Malhotra, Dheeraj; Soneson, Charlotte; Robinson, Mark D.
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A unique bipartite Polycomb signature regulates stimulus-response transcription during development
err2021-02-18
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errKitazawa, Taro; Machlab, Dania; Joshi, Onkar; Maiorano, Nicola; Kohler, Hubertus; Ducret, Sebastien; Kessler, Sandra; Gezelius, Henrik; Soneson, Charlotte; Papasaikas, Panagiotis; Lopez-Bendito, Guillermina; Stadler, Michael B.; Rijli, Filippo M.
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Preprocessing choices affect RNA velocity results for droplet scRNA-seq data
err2021-01-11
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errSoneson, Charlotte; Srivastava, Avi; Patro, Rob; Stadler, Michael B.
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MiR-CLIP reveals iso-miR selective regulation in the miR-124 targetome
err2020-12-09
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errWang, Yuluan; Soneson, Charlotte; Malinowska, Anna L.; Laski, Artur; Ghosh, Souvik; Kanitz, Alexander; Gebert, Luca F. R.; Robinson, Mark D.; Hall, Jonathan
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muscat detects subpopulation-specific state transitions from multi-sample multi-condition single-cell transcriptomics data
err2020-11-30
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errCrowell, Helena L.; Soneson, Charlotte; Germain, Pierre-Luc; Calini, Daniela; Collin, Ludovic; Raposo, Catarina; Malhotra, Dheeraj; Robinson, Mark D.
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Alignment and mapping methodology influence transcript abundance estimation
err2020-09-07
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errSrivastava, Avi; Malik, Laraib; Sarkar, Hirak; Zakeri, Mohsen; Almodaresi, Fatemeh; Soneson, Charlotte; Love, Michael I.; Kingsford, Carl; Patro, Rob
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