Alexandros Stamatakis

heidelberg institute for theoretical studies

H指数:76

被引数:9.8万

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工作经历

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荣誉奖项

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Phylogenetic reconciliation supports a methanogenic ancestor of the Archaea and a derived origin for host-associated lineages

系统发育共线性分析支持古菌具有产甲烷祖先以及宿主相关谱系的衍生起源

Nature Communications

IF15.7

2026-08-130

OAAI

In situ microRaman spectroscopy as a screening tool for assessing human DNA preservation in ancient dental remains

原位微拉曼光谱作为评估人类DNA在古代牙科遗骸中保存状况的筛选工具

Microchemical Journal

IF5.1

2026-02-220

OAAI

Genetic affinities between the ancient Greek colony of Amvrakia and its metropolis

古代希腊殖民地Amvrakia与其母邦之间的遗传亲缘关系

Genome Biology

IF9.4

2026-02-071

PRE

Psonis, Nikolaos; Tabakaki, Eugenia; Vassou, Despoina; Papadantonakis, Stefanos; Souleles, Angelos; Nafplioti, Argyro; Kousis Tsampazis, Georgios; Papadopoulou, Angeliki; Xanthopoulos, Kiriakos; Panailidis, Panagiotis; Georgiadou, Angeliki; Papakosta, Dimitra; Koursioti, Sevasti; Evangelinou, Maria; Papadopoulou, Varvara; Evaggeloglou, Paraskevi; Korka, Elena; Christidis, Ioannis; Ioannou, Michael; Kontogianni, Theodora; Arkoumanis, Athanasios; Stamatakis, Alexandros; Poulakakis, Nikos; Papageorgopoulou, Christina; Pavlidis, Pavlos

Bit-Reproducible Parallel Phylogenetic Tree Inference

Bioinformatics

IF5.4

2026-01-300

raxtax: a k-mer-based non-Bayesian taxonomic classifier

RaxTax：一种基于k-mer的非贝叶斯分类学分类器

BIOINFORMATICS

IF5.4

2025-12-010

OAAI

Accelerating Maximum Likelihood Phylogenetic Inference via Early Stopping to Evade (Over-)optimization

通过早期停止来规避（过度）优化的加速最大似然系统发育推断

SYSTEMATIC BIOLOGY

IF5.7

2025-09-011

OAAI

Predicting Phylogenetic Bootstrap Values via Machine Learning

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2024-10-171

OAAI

Cryptic diversity and phylogeographic patterns of Mediodactylus species in the Eastern Mediterranean region

MOLECULAR PHYLOGENETICS AND EVOLUTION

IF3.6

2024-08-011

PRE

Phylogenetic reconciliation: making the most of genomes to understand microbial ecology and evolution

ISME JOURNAL

IF10

2024-07-130

OAAI

Identification of the 18 World War II executed citizens of Adele, Rethymnon, Crete using an ancient DNA approach and low coverage genomes

FORENSIC SCIENCE INTERNATIONAL-GENETICS

IF3.1

2024-07-010

PRE

Complexity of avian evolution revealed by family-level genomes

Nature

IF48.5

2024-04-010

OAAI

Josefin Stiller; Shaohong Feng; Al-Aabid Chowdhury; Iker Rivas-González; David A. Duchêne; Qi Fang; Yuan Deng; Alexey Kozlov; Alexandros Stamatakis; Santiago Claramunt; Jacqueline M. T. Nguyen; Simon Y. W. Ho; Brant C. Faircloth; Julia Haag; Peter Houde; Joel Cracraft; Metin Balaban; Uyen Mai; Guangji Chen; Rongsheng Gao; Chengran Zhou; Yulong Xie; Zijian Huang; Zhen Cao; Zhi Yan; Huw A. Ogilvie; Luay Nakhleh; Bent Lindow; Benoit Morel; Jon Fjeldså; Peter A. Hosner; Rute R. da Fonseca; Bent Petersen; Joseph A. Tobias; Tamás Székely; Jonathan David Kennedy; Andrew Hart Reeve; Andras Liker; Martin Stervander; Agostinho Antunes; Dieter Thomas Tietze; Mads F. Bertelsen; Fumin Lei; Carsten Rahbek; Gary R. Graves; Mikkel H. Schierup; Tandy Warnow; Edward L. Braun; M. Thomas P. Gilbert; Erich D. Jarvis; Siavash Mirarab; Guojie Zhang

Simulations of Sequence Evolution: How (Un)realistic They Are and Why

序列演化的模拟: 它们有多 (不) 现实以及为什么

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2023-12-204

OAAI

Adaptive RAxML-NG: Accelerating Phylogenetic Inference under Maximum Likelihood using Dataset Difficulty

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2023-10-066

OAAI

Parameter Estimation and Species Tree Rooting Using ALE and GeneRax

使用ALE和GeneRax进行参数估计和物种树生根

GENOME BIOLOGY AND EVOLUTION

IF2.8

2023-07-184

OAAI

Lagrange-NG: The next generation of Lagrange

SYSTEMATIC BIOLOGY

IF5.7

2023-01-270

OAAI

Spatial and temporal heterogeneity in human mobility patterns in Holocene Southwest Asia and the East Mediterranean

全新世西南亚和东地中海地区人类流动模式的时空异质性

CURRENT BIOLOGY

IF7.5

2023-01-0116

OAAI

Koptekin, Dilek; Yuncu, Eren; Rodriguez-Varela, Ricardo; Altinisxik, N. Ezgi; Psonis, Nikolaos; Kashuba, Natalia; Yorulmaz, Sevgi; George, Robert; Kazanci, Duygu Deniz; Kaptan, Damla; Gurun, Kanat; Vural, Kivilcim Basxak; Gemici, Hasan Can; Vassou, Despoina; Daskalaki, Evangelia; Karamurat, Cansu; Lagerholm, Vendela K.; Erdal, Omur Dilek; Kirdoek, Emrah; Marangoni, Aurelio; Schachner, Andreas; Ustundag, Handan; Shengelia, Ramaz; Bitadze, Liana; Elashvili, Mikheil; Stravopodi, Eleni; Ozbasxaran, Mihriban; Duru, Ganesx; Nafplioti, Argyro; Rose, C. Brian; Gencer, Tugba; Darbyshire, Gareth; Gavashelishvili, Alexander; Pitskhelauri, Konstantine; Cevik, Ozlem; Vurusxkan, Osman; Kyparissi-Apostolika, Nina; Bayakkarakaya, Ali Metin; Oguzhanoglu, Umay; Gunel, Sevinc; Tabakaki, Eugenia; Aliev, Akper; Ibrahimov, Anar; Shadlinski, Vaqif; Sampson, Adamantios; Kilinc, Gulsah Merve; Atakuman, Cigdem; Stamatakis, Alexandros; Poulakakis, Nikos; Erdal, Yilmaz Selim; Pavlidis, Pavlos; Stora, Jan; Ozer, Fasun; Goetherstroem, Anders; Somel, Mehmet

From Easy to Hopeless-Predicting the Difficulty of Phylogenetic Analyses

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2022-11-1721

OAAI

CellPhy: accurate and fast probabilistic inference of single-cell phylogenies from scDNA-seq data

CellPhy: 从scdna-seq数据准确快速地推断单细胞系统发育

GENOME BIOLOGY

IF9.4

2022-01-2631

OAAI

SpeciesRax: A Tool for Maximum Likelihood Species Tree Inference from Gene Family Trees under Duplication, Transfer, and Loss