Epiviz: interactive visual analytics for functional genomics data

doi:10.1038/NMETH.3038

2014-08-03

Florin Chelaru

Llewellyn Smith

Naomi Goldstein

Héctor Corrada Bravo *

DOI：10.1038/NMETH.3038

原文链接

查看原文

摘要

En 中文

Visualization is an integral aspect of genomics data analysis. Algorithmic-statistical analysis and interactive visualization are most effective when used iteratively. Epiviz (http://epiviz.cbcb.umd.edu/), a web-based genome browser, and the Epivizr Bioconductor package allow interactive, extensible and reproducible visualization within a state-of-the-art data-analysis platform.

Keyword:

BIOCONDUCTOR

EPIGENOME

BROWSER

AI总结

对已上传原文的论文进行重点信息的提取，主要内容包括：简要概述、研究摘要、背景介绍、关键亮点、图文解析、展望与总结。

期刊

Nature Methods

IF:

32.1

论文数:

7.2K

被引数:

12.7W

机构

University System of Maryland

学者数:

6.4W

论文数: 5.6W

被引数: 113

引用论文

Differential abundance analysis for microbial marker-gene surveys 微生物标记-基因调查的差异丰度分析

NATURE METHODS

IF32.1

2013-09-29

1.8K

OAAI

Paulson, Joseph N.; Stine, O. Colin; Bravo, Hector Corrada; Pop, Mihai

Arabic Handwritten Characters Classification Using Learning Vector Quantization Algorithm

Lecture Notes in Computer Science

IF0

2008-01-01

PREAI

Mohamed A. Ali

Increased methylation variation in epigenetic domains across cancer types

NATURE GENETICS

IF31.8

2011-06-26

946

OAAI

Hansen, Kasper Daniel; Timp, Winston; Bravo, Hector Corrada; Sabunciyan, Sarven; Langmead, Benjamin; McDonald, Oliver G.; Wen, Bo; Wu, Hao; Liu, Yun; Diep, Dinh; Briem, Eirikur; Zhang, Kun; Irizarry, Rafael A.; Feinberg, Andrew P.

The UCSC Genome Browser Database: 2008 update

NUCLEIC ACIDS RESEARCH

IF13.1

2007-12-23

487

OAAI

Karolchik, D.; Kuhn, R. M.; Baertsch, R.; Barber, G. P.; Clawson, H.; Diekhans, M.; Giardine, B.; Harte, R. A.; Hinrichs, A. S.; Hsu, F.; Kober, K. M.; Miller, W.; Pedersen, J. S.; Pohl, A.; Raney, B. J.; Rhead, B.; Rosenbloom, K. R.; Smith, K. E.; Stanke, M.; Thakkapallayil, A.; Trumbower, H.; Wang, T.; Zweig, A. S.; Haussler, D.; Kent, W. J.

The Human Epigenome Browser at Washington University

NATURE METHODS

IF32.1

2011-11-29

276

OAAI

Zhou, Xin; Maricque, Brett; Xie, Mingchao; Li, Daofeng; Sundaram, Vasavi; Martin, Eric A.; Koebbe, Brian C.; Nielsen, Cydney; Hirst, Martin; Farnham, Peggy; Kuhn, Robert M.; Zhu, Jingchun; Smirnov, Ivan; Kent, W. James; Haussler, David; Madden, Pamela A. F.; Costello, Joseph F.; Wang, Ting

Ensembl 2009

NUCLEIC ACIDS RESEARCH

IF13.1

2009-01-01

735

OAAI

Hubbard, T. J. P.; Aken, B. L.; Ayling, S.; Ballester, B.; Beal, K.; Bragin, E.; Brent, S.; Chen, Y.; Clapham, P.; Clarke, L.; Coates, G.; Fairley, S.; Fitzgerald, S.; Fernandez-Banet, J.; Gordon, L.; Graf, S.; Haider, S.; Hammond, M.; Holland, R.; Howe, K.; Jenkinson, A.; Johnson, N.; Kahari, A.; Keefe, D.; Keenan, S.; Kinsella, R.; Kokocinski, F.; Kulesha, E.; Lawson, D.; Longden, I.; Megy, K.; Meidl, P.; Overduin, B.; Parker, A.; Pritchard, B.; Rios, D.; Schuster, M.; Slater, G.; Smedley, D.; Spooner, W.; Spudich, G.; Trevanion, S.; Vilella, A.; Vogel, J.; White, S.; Wilder, S.; Zadissa, A.; Birney, E.; Cunningham, F.; Curwen, V.; Durbin, R.; Fernandez-Suarez, X. M.; Herrero, J.; Kasprzyk, A.; Proctor, G.; Smith, J.; Searle, S.; Flicek, P.

Holmium Laser Enucleation of Prostate: Outcome and Complications of Self-taught Learning Curve

Urology

IF0

2009-05-01

PREAI

José Placer; Antoni Gelabert-Mas; Felip Vallmanya; Josep M. Manresa; Violeta Menéndez; Ramón Cortadellas; Octavio Arango

Investigation of reactive ion etching of dielectrics and Si in CHF3∕O2 or CHF3∕Ar for photovoltaic applications

Journal of Vacuum Science & Technology A: Vacuum, Surfaces, and Films

IF0

2006-08-07

PREAI

C. Gatzert; A. W. Blakers; Prakash N. K. Deenapanray; D. Macdonald; F. D. Auret

Polaris: A System for Query, Analysis, and Visualization of Multidimensional Databases

COMMUNICATIONS OF THE ACM

IF12.2

2008-11-01

OAAI

Stolte, Chris; Tang, Diane; Hanrahan, Pat

Bioconductor: open software development for computational biology and bioinformatics

GENOME BIOLOGY

IF9.4

2004-09-15

1.1W

OAAI

Gentleman, RC; Carey, VJ; Bates, DM; Bolstad, B; Dettling, M; Dudoit, S; Ellis, B; Gautier, L; Ge, YC; Gentry, J; Hornik, K; Hothorn, T; Huber, W; Iacus, S; Irizarry, R; Leisch, F; Li, C; Maechler, M; Rossini, AJ; Sawitzki, G; Smith, C; Smyth, G; Tierney, L; Yang, JYH; Zhang, JH

查看更多内容