Héctor Corrada Bravo - Publications, H-index & Citations

Héctor Corrada Bravo

Genentech

41H指数

161论文数

2.4W被引数

收录论文 40

发表时间

Scoring gene importance by interpreting single-cell foundation models 通过解释单细胞基础模型对基因重要性进行评分

Nature Biotechnology

IF41.7

2026-05-27

OAAI

Maxwell P. Gold; Miguel Reyes; Nathaniel Diamant; Tony Kuo; Ehsan Hajiramezanali; Jane W. Newburger; Mary Beth F. Son; Pui Y. Lee; Gabriele Scalia; Aicha BenTaieb; Sharookh B. Kapadia; Anupriya Tripathi; Héctor Corrada Bravo; Graham Heimberg; Tommaso Biancalani

Decoding sequence determinants of gene expression in diverse cellular and disease states 解码基因表达在不同细胞和疾病状态中的序列决定因素

Nature Methods

IF32.1

2026-05-25

PREAI

Avantika Lal; Alexander Karollus; Laura Gunsalus; David Garfield; Surag Nair; Alex M. Tseng; M. Grace Gordon; John Blischak; Bryce Van De Geijn; Tushar Bhangale; Jenna L. Collier; Nathaniel Diamant; Tommaso Biancalani; Hector Corrada Bravo; Gabriele Scalia; Gokcen Eraslan

Learning multi-cellular representations of single-cell transcriptomics data enables characterization of patient-level disease states 学习单细胞转录组数据的细胞群表征能够实现患者层面疾病状态的表征

Cell Systems

IF7.7

2026-03-31

OAAI

Tianyu Liu; Edward De Brouwer; Archit Verma; Alsu Missarova; Tony Kuo; Nathaniel Diamant; Hanchen Wang; Minsheng Hao; Tommaso Biancalani; Hector Corrada Bravo; Gabriele Scalia; Aviv Regev; Graham Heimberg

SPEX: A modular end-to-end platform for high-plex tissue spatial omics analysis SPEX：一个模块化的端到端平台，用于高通量组织空间组学分析

GigaScience

IF3.9

2025-08-29

OAAI

Xiao Li; Ximo Pechuan-Jorge; Tyler Risom; Conrad Foo; Alexander Prilipko; Artem Zubkov; Caleb Chan; Patrick Chang; Frank Peale; James Ziai; Sandra Rost; Derrek Hibar; Lisa McGinnis; Evgeniy Tabatsky; Xin Ye; Hector Corrada Bravo; Zhen Shi; Malgorzata Nowicka; Jon Scherdin; James Cowan; Jennifer Giltnane; Darya Orlova; Rajiv Jesudason

Multiplexed, image-based pooled screens in primary cells and tissues with PerturbView (OCT, 10.1038/s41587-024-02391-0, 2024)基于图像的多路复用混合筛选方法在原代细胞和组织中的应用（PerturbView, OCT, 10.1038/s41587-024-02391-0, 2024）

NATURE BIOTECHNOLOGY

IF41.7

2025-02-26

PREAI

Kudo, Takamasa; Meireles, Ana M.; Moncada, Reuben; Chen, Yushu; Wu, Ping; Gould, Joshua; Hu, Xiaoyu; Kornfeld, Opher; Jesudason, Rajiv; Foo, Conrad; Hockendorf, Burkhard; Corrada Bravo, Hector; Town, Jason P.; Wei, Runmin; Rios, Antonio; Chandrasekar, Vineethkrishna; Heinlein, Melanie; Chuong, Amy S.; Cai, Shuangyi; Lu, Cherry Sakura; Coelho, Paula; Mis, Monika; Celen, Cemre; Kljavin, Noelyn; Jiang, Jian; Richmond, David; Thakore, Pratiksha; Benito-Gutierrez, Elia; Geiger-Schuller, Kathryn; Hleap, Jose Sergio; Kayagaki, Nobuhiko; Melo, Felipe; Mcginnis, Lisa; Li, Bo; Singh, Avtar; Garraway, Levi; Rozenblatt-Rosen, Orit; Regev, Aviv; Lubeck, Eric

Multiplexed, image-based pooled screens in primary cells and tissues with PerturbView 具有扰动视图的原代细胞和组织中基于图像的多路复用合并屏幕

NATURE BIOTECHNOLOGY

IF41.7

2024-10-07

PREAI

Kudo, Takamasa; Meireles, Ana M.; Moncada, Reuben; Chen, Yushu; Wu, Ping; Gould, Joshua; Hu, Xiaoyu; Kornfeld, Opher; Jesudason, Rajiv; Foo, Conrad; Hockendorf, Burkhard; Bravo, Hector Corrada; Town, Jason P.; Wei, Runmin; Rios, Antonio; Chandrasekar, Vineethkrishna; Heinlein, Melanie; Chuong, Amy S.; Cai, Shuangyi; Lu, Cherry Sakura; Coelho, Paula; Mis, Monika; Celen, Cemre; Kljavin, Noelyn; Jiang, Jian; Richmond, David; Thakore, Pratiksha; Benito-Gutierrez, Elia; Geiger-Schuller, Kathryn; Hleap, Jose Sergio; Kayagaki, Nobuhiko; Melo, Felipe; McGinnis, Lisa; Li, Bo; Singh, Avtar; Garraway, Levi; Rozenblatt-Rosen, Orit; Regev, Aviv; Lubeck, Eric

Reporting guidelines for human microbiome research: the STORMS checklist 人类微生物组研究报告指南: 风暴清单

NATURE MEDICINE

IF50

2021-11-17

212

OAAI

Mirzayi, Chloe; Renson, Audrey; Zohra, Fatima; Elsafoury, Shaimaa; Geistlinger, Ludwig; Kasselman, Lora J.; Eckenrode, Kelly; van de Wijgert, Janneke; Loughman, Amy; Marques, Francine Z.; MacIntyre, David A.; Arumugam, Manimozhiyan; Azhar, Rimsha; Beghini, Francesco; Bergstrom, Kirk; Bhatt, Ami; Bisanz, Jordan E.; Braun, Jonathan; Bravo, Hector Corrada; Buck, Gregory A.; Bushman, Frederic; Casero, David; Clarke, Gerard; Carmen Collado, Maria; Cotter, Paul D.; Cryan, John F.; Demmer, Ryan T.; Devkota, Suzanne; Elinav, Eran; Escobar, Juan S.; Fettweis, Jennifer; Finn, Robert D.; Fodor, Anthony A.; Forslund, Sofia; Franke, Andre; Furlanello, Cesare; Gilbert, Jack; Grice, Elizabeth; Haibe-Kains, Benjamin; Handley, Scott; Herd, Pamela; Holmes, Susan; Jacobs, Jonathan P.; Karstens, Lisa; Knight, Rob; Knights, Dan; Koren, Omry; Kwon, Douglas S.; Langille, Morgan; Lindsay, Brianna; McGovern, Dermot; McHardy, Alice C.; McWeeney, Shannon; Mueller, Noel T.; Nezi, Luigi; Olm, Matthew; Palm, Noah; Pasolli, Edoardo; Raes, Jeroen; Redinbo, Matthew R.; Ruhlemann, Malte; Sartor, R. Balfour; Schloss, Patrick D.; Schriml, Lynn; Segal, Eran; Shardell, Michelle; Sharpton, Thomas; Smirnova, Ekaterina; Sokol, Harry; Sonnenburg, Justin L.; Srinivasan, Sujatha; Thingholm, Louise B.; Turnbaugh, Peter J.; Upadhyay, Vaibhav; Walls, Ramona L.; Wilmes, Paul; Yamada, Takuji; Zeller, Georg; Zhang, Mingyu; Zhao, Ni; Zhao, Liping; Bao, Wenjun; Culhane, Aedin; Devanarayan, Viswanath; Dopazo, Joaquin; Fan, Xiaohui; Fischer, Matthias; Jones, Wendell; Kusko, Rebecca; Mason, Christopher E.; Mercer, Tim R.; Sansone, Susanna-Assunta; Scherer, Andreas; Shi, Leming; Thakkar, Shraddha; Tong, Weida; Wolfinger, Russ; Hunter, Christopher; Segata, Nicola; Huttenhower, Curtis; Dowd, Jennifer B.; Jones, Heidi E.; Waldron, Levi

gEAR: Gene Expression Analysis Resource portal for community-driven, multi-omic data exploration

NATURE METHODS

IF32.1

2021-06-25

OAAI

Orvis, Joshua; Gottfried, Brian; Kancherla, Jayaram; Adkins, Ricky S.; Song, Yang; Dror, Amiel A.; Olley, Dustin; Rose, Kevin; Chrysostomou, Elena; Kelly, Michael C.; Milon, Beatrice; Matern, Maggie S.; Azaiez, Hela; Herb, Brian; Colantuoni, Carlo; Carter, Robert L.; Ament, Seth A.; Kelley, Matthew W.; White, Owen; Bravo, Hector Corrada; Mahurkar, Anup; Hertzano, Ronna

Evidence-Based Network Approach to Recommending Targeted Cancer Therapies

JCO CLINICAL CANCER INFORMATICS

IF2.8

2020-11-01

OAAI

Kancherla, Jayaram; Rao, Shruti; Bhuvaneshwar, Krithika; Riggins, Rebecca B.; Beckman, Robert A.; Madhavan, Subha; Bravo, Hector Corrada; Boca, Simina M.

A framework for assessing 16S rRNA marker-gene survey data analysis methods using mixtures.

MICROBIOME

IF12.7

2020-03-13

OAAI

Olson, Nathan D.; Kumar, M. Senthil; Li, Shan; Braccia, Domenick J.; Hao, Stephanie; Timp, Winston; Salit, Marc L.; Stine, O. Colin; Bravo, Hector Corrada

Analysis and correction of compositional bias in sparse sequencing count data

BMC GENOMICS

IF3.7

2018-11-06

OAAI

Kumar, M. Senthil; Slud, Eric V.; Okrah, Kwame; Hicks, Stephanie C.; Hannenhalli, Sridhar; Bravo, Hector Corrada

Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018

MICROBIOME

IF12.7

2018-11-05

OAAI

Meisel, Jacquelyn S.; Nasko, Daniel J.; Brubach, Brian; Cepeda-Espinoza, Victoria; Chopyk, Jessica; Corrada-Bravo, Hector; Fedarko, Marcus; Ghurye, Jay; Javkar, Kiran; Olson, Nathan D.; Shah, Nidhi; Allard, Sarah M.; Bazinet, Adam L.; Bergman, Nicholas H.; Brown, Alexis; Caporaso, J. Gregory; Conlan, Sean; DiRuggiero, Jocelyne; Forry, Samuel P.; Hasan, Nur A.; Kralj, Jason; Luethy, Paul M.; Milton, Donald K.; Ondov, Brian D.; Preheim, Sarah; Ratnayake, Shashikala; Rogers, Stephanie M.; Rosovitz, M. J.; Sakowski, Eric G.; Schliebs, Nils Oliver; Sommer, Daniel D.; Ternus, Krista L.; Uritskiy, Gherman; Zhang, Sean X.; Pop, Mihai; Treangen, Todd J.

The Splicing Factor RNA-Binding Fox Protein 1 Mediates the Cellular Immune Response in Drosophila melanogaster

JOURNAL OF IMMUNOLOGY

IF3.4

2018-08-15

OAAI

Nazario-Toole, Ashley E.; Robalino, Javier; Okrah, Kwame; Corrada-Bravo, Hector; Mount, Stephen M.; Wu, Louisa P.

Metaviz: interactive statistical and visual analysis of metagenomic data

NUCLEIC ACIDS RESEARCH

IF13.1

2018-02-26

OAAI

Wagner, Justin; Chelaru, Florin; Kancherla, Jayaram; Paulson, Joseph N.; Zhang, Alexander; Felix, Victor; Mahurkar, Anup; Elmqvist, Niklas; Bravo, Hector Corrada

Bioinformatics of DNA

PROCEEDINGS OF THE IEEE

IF25.9

2017-03-01

PREAI

Heath, Lenwood S.; Bravo, Hector Corrada; Caccamo, Mario; Schatz, Michael

Dual Transcriptome Profiling of Leishmania-Infected Human Macrophages Reveals Distinct Reprogramming Signatures

MBIO

IF4.7

2016-07-06

OAAI

Fernandes, Maria Cecilia; Dillon, Laura A. L.; Belew, Ashton Trey; Bravo, Hector Corrada; Mosser, David M.; El-Sayed, Najib M.

Heterogeneity of transcription factor binding specificity models within and across cell lines

GENOME RESEARCH

IF5.5

2016-06-16

OAAI

Sharmin, Mahfuza; Bravo, Hector Corrada; Hannenhalli, Sridhar

Individual-specific changes in the human gut microbiota after challenge with enterotoxigenic Escherichia coli and subsequent ciprofloxacin treatment

BMC GENOMICS

IF3.7

2016-06-08

OAAI

Pop, Mihai; Paulson, Joseph N.; Chakraborty, Subhra; Astrovskaya, Irina; Lindsay, Brianna R.; Li, Shan; Bravo, Hector Corrada; Harro, Clayton; Parkhill, Julian; Walker, Alan W.; Walker, Richard I.; Sack, David A.; Stine, O. Colin

Transcriptome Remodeling in Trypanosoma cruzi and Human Cells during Intracellular Infection

PLOS PATHOGENS

IF4.9

2016-04-05

121

OAAI

Li, Yuan; Shah-Simpson, Sheena; Okrah, Kwame; Belew, A. Trey; Choi, Jungmin; Caradonna, Kacey L.; Padmanabhan, Prasad; Ndegwa, David M.; Temanni, M. Ramzi; Bravo, Hector Corrada; El-Sayed, Najib M.; Burleigh, Barbara A.

Distinct genomic and epigenomic features demarcate hypomethylated blocks in colon cancer

BMC CANCER

IF3.4

2016-02-11

OAAI

Sharmin, Mahfuza; Bravo, Hector Corrada; Hannenhalli, Sridhar

研究方向