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Rapidly evolving homing CRISPR barcodes

delete2016-12-05
delete183
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OA
AI
R
Reza Kalhor
P
Prashant Mali *
G
George M. Church *
DOI:10.1038/NMETH.4108delete
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摘要

摘要

En 中文
We present an approach for engineering evolving DNA barcodes in living cells. A homing guide RNA (hgRNA) scaffold directs the Cas9-h9RNA complex to the DNA locus of the hgRNA itself. We show that this homing CRISPR-Cas9 system acts as an expressed genetic barcode that diversifies its sequence and that the rate of diversification can be controlled in cultured cells. We further evaluate these barcodes in cell populations and show that they can be used to record lineage history and that the barcode RNA can be amplified in situ, a prerequisite for in situ sequencing. This integrated approach will have wide-ranging applications, such as in deep lineage tracing, cellular barcoding, molecular recording, dissecting cancer biology, and connectome mapping.
Keyword:
IN-VIVO
RNA
CELLS
SITU
CAS9
DNA
BIOLOGY
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Nature Methods 封面图
Nature Methods
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32.1
论文数:
7.2K
被引数:
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Harvard University
学者数:
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论文数: 22.0W
被引数: 28.7W
H
Harvard Medical School
学者数:
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论文数: 4.8W
被引数: 91
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