arrow
返回

Single cell transcriptomics: moving towards multi-omics

delete2019-01-01
delete43
PRE
AI
Y
Yanling Song
X
Xing Xu
W
Wei Wang
T
Tian Tian
朱
朱志 (Zhi Zhu)
C
Chaoyong Yang *
DOI:10.1039/c8an01852adelete
delete原文链接
delete原文求助
delete分享
delete收藏
摘要

摘要

En 中文
As the basic units of life, cells present dramatic heterogeneity which, although crucial to an organism's behavior, is undetected by bulk analysis. Recently, much attention has been paid to reveal cellular types and states at the single-cell level including genome, transcriptome, epigenome or proteome-based on sequencing and immunological methods, etc. Among these approaches, transcriptomic analysis provides knowledge of the molecular linkages between genetic information and the proteome, leading to a comprehensive understanding of biological processes and diseases. Compared to single-dimensional inspection, multi-dimensional analysis combines the transcriptome with other omics to enable a comprehensive understanding of single-cell processes and functions. Moreover, compared to separate observations or single snapshots, spatial dimension and lineage time tracing can provide a more multifaceted understanding of the micro-environment and dynamic processes. In this review, we will introduce current transcriptomic analysis methods, as well as their combination with other omics methods including genomic, proteomic, and epigenetic approaches. Multi-dimensional analysis using these approaches for spatial positioning and lineage tracing applications will be reviewed. The future perspectives of single-cell multi-omics analysis based on the transcriptome will also be discussed.
Keyword:
NUCLEUS RNA-SEQ
EMBRYONIC STEM-CELLS
MESSENGER-RNA
CHROMATIN ACCESSIBILITY
DNA METHYLATION
GENE-EXPRESSION
HIGH-THROUGHPUT
WHOLE-GENOME
DISPLACEMENT AMPLIFICATION
METHYLOME LANDSCAPES
AI总结

AI总结

对已上传原文的论文进行重点信息的提取,主要内容包括:简要概述、研究摘要、背景介绍、关键亮点、图文解析、展望与总结。

期刊

A
Analyst
IF:
3.3
论文数:
1.6W
被引数:
3.3W

机构

S
shanghai jiao tong university
学者数:
15.7W
论文数: 11.7W
被引数: 159
X
xiamen university
学者数:
5.9W
论文数: 3.8W
被引数: 67
引用论文

引用论文

Smart-seq2 for sensitive full-length transcriptome profiling in single cells单细胞中敏感的全长转录组分析的Smart-seq2
err2013-09-22
err1.9K
PREAI
errPicelli, Simone; Bjorklund, Asa K.; Faridani, Omid R.; Sagasser, Sven; Winberg, Gosta; Sandberg, Rickard
err分享
err收藏
Separation and parallel sequencing of the genomes and transcriptomes of single cells using G&T-seq
err2016-09-29
err118
PREAI
errMacaulay, Iain C.; Teng, Mabel J.; Haerty, Wilfried; Kumar, Parveen; Ponting, Chris P.; Voet, Thierry
err分享
err收藏
Whole-genome multiple displacement amplification from single cells
err2006-11-30
err273
PREAI
errSpits, Claudia; Le Caignec, Cedric; De Rycke, Martine; Van Haute, Lindsey; Van Steirteghem, Andre; Liebaers, Inge; Sermon, Karen
err分享
err收藏
CEL-Seq: Single-Cell RNA-Seq by Multiplexed Linear Amplification
err2012-09-01
err1.3K
errOAAI
errHashimshony, Tamar; Wagner, Florian; Sher, Noa; Yanai, Itai
err分享
err收藏
Lessons from non-canonical splicing
err2016-05-31
err233
errOAAI
errSibley, Christopher R.; Blazquez, Lorea; Ule, Jernej
err分享
err收藏
Thalamocortical Connectivity Correlates with Phenotypic Variability in Dystonia
err2014-05-23
err0
errOAAI
errAn Vo; Wataru Sako; Martin Niethammer; Maren Carbon; Susan B. Bressman; Aziz M. Uluğ; David Eidelberg
err分享
err收藏
Effect of Oral Hygiene and 0.12% Chlorhexidine Gluconate Oral Rinse in Preventing Ventilator-Associated Pneumonia After Cardiovascular Surgery
err2014-04-01
err0
errOAAI
errLiliana Noemí Nicolosi; Maria del Carmen Rubio; Carlos Daniel Martinez; Nidia Noemí González; Marisa Edith Cruz
err分享
err收藏
Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state单细胞chip-seq揭示了由染色质状态定义的细胞亚群
err2015-10-12
err813
errOAAI
errRotem, Assaf; Ram, Oren; Shoresh, Noam; Sperling, Ralph A.; Goren, Alon; Weitz, David A.; Bernstein, Bradley E.
err分享
err收藏
学者 查看更多内容