arrow
返回

Software Tools for 2D Cell Segmentation

delete2024-02-17
delete2
delete
OA
AI
L
Liu, Ping
李军 封面图
李军 (Jun Li)
J
Jiaxing Chang
P
Pinli Hu
孙悦 封面图
孙悦 (Yue Sun)
Y
Yanan Jiang
F
Fan Zhang
H
Haojing Shao *
DOI:10.3390/cells13040352delete
delete原文链接
delete分享
delete收藏
查看原文
摘要

摘要

En 中文
Cell segmentation is an important task in the field of image processing, widely used in the life sciences and medical fields. Traditional methods are mainly based on pixel intensity and spatial relationships, but have limitations. In recent years, machine learning and deep learning methods have been widely used, providing more-accurate and efficient solutions for cell segmentation. The effort to develop efficient and accurate segmentation software tools has been one of the major focal points in the field of cell segmentation for years. However, each software tool has unique characteristics and adaptations, and no universal cell-segmentation software can achieve perfect results. In this review, we used three publicly available datasets containing multiple 2D cell-imaging modalities. Common segmentation metrics were used to evaluate the performance of eight segmentation tools to compare their generality and, thus, find the best-performing tool.
Keyword:
cell segmentation
image processing
2D cell
performance
AI总结

AI总结

对已上传原文的论文进行重点信息的提取,主要内容包括:简要概述、研究摘要、背景介绍、关键亮点、图文解析、展望与总结。

期刊

Cells 封面图
Cells
IF:
5.2
论文数:
2.1W
被引数:
9.4W

机构

T
Taiyuan University of Technology
学者数:
2.2W
论文数: 1.4W
被引数: 1.8W
G
Guangdong Laboratory for Lingnan Modern Agriculture
学者数:
2.8K
论文数: 1.1K
被引数: 6
引用论文

引用论文

A SIMPLI (Single-cell Identification from MultiPLexed Images) approach for spatially-resolved tissue phenotyping at single-cell resolution
err2022-02-09
err17
errOAAI
errBortolomeazzi, Michele; Montorsi, Lucia; Temelkovski, Damjan; Keddar, Mohamed Reda; Acha-Sagredo, Amelia; Pitcher, Michael J.; Basso, Gianluca; Laghi, Luigi; Rodriguez-Justo, Manuel; Spencer, Jo; Ciccarelli, Francesca D.
err分享
err收藏
Long-lifetime All-polymer Artificial Muscle Transducers
err2011-02-01
err0
PREAI
errRoy Kornbluh; Annjoe Wong-Foy; Ron Pelrine; Harsha Prahlad; Brian McCoy
err分享
err收藏
ilastik: interactive machine learning for (bio) image analysisilastik: 用于 (生物) 图像分析的交互式机器学习
err2019-09-30
err1.7K
errOAAI
errBerg, Stuart; Kutra, Dominik; Kroeger, Thorben; Straehle, Christoph N.; Kausler, Bernhard X.; Haubold, Carsten; Schiegg, Martin; Ales, Janez; Beier, Thorsten; Rudy, Markus; Eren, Kemal; Cervantes, Jaime I.; Xu, Buote; Beuttenmueller, Fynn; Wolny, Adrian; Zhang, Chong; Koethe, Ullrich; Hamprecht, Fred A.; Kreshuk, Anna
err分享
err收藏
An objective comparison of cell-tracking algorithms细胞跟踪算法的客观比较
err2017-10-30
err366
errOAAI
errUlman, Vladimir; Maska, Martin; Magnusson, Klas E. G.; Ronneberger, Olaf; Haubold, Carsten; Harder, Nathalie; Matula, Pavel; Matula, Petr; Svoboda, David; Radojevic, Miroslav; Smal, Ihor; Rohr, Karl; Jalden, Joakim; Blau, Helen M.; Dzyubachyk, Oleh; Lelieveldt, Boudewijn; Xiao, Pengdong; Li, Yuexiang; Cho, Siu-Yeung; Dufour, Alexandre C.; Olivo-Marin, Jean-Christophe; Reyes-Aldasoro, Constantino C.; Solis-Lemus, Jose A.; Bensch, Robert; Brox, Thomas; Stegmaier, Johannes; Mikut, Ralf; Wolf, Steffen; Hamprecht, Fred A.; Esteves, Tiago; Quelhas, Pedro; Demirel, Omer; Malmstrom, Lars; Jug, Florian; Tomancak, Pavel; Meijering, Erik; Munoz-Barrutia, Arrate; Kozubek, Michal; Ortiz-de-Solorzano, Carlos
err分享
err收藏
Nucleus segmentation: towards automated solutions
err2022-04-01
err30
errOAAI
errHollandi, Reka; Moshkov, Nikita; Paavolainen, Lassi; Tasnadi, Ervin; Piccinini, Filippo; Horvath, Peter
err分享
err收藏
err分享
err收藏
Whole-cell segmentation of tissue images with human-level performance using large-scale data annotation and deep learning使用大规模数据注释和深度学习对组织图像进行具有人类水平性能的全细胞分割
err2021-11-18
err345
errOAAI
errGreenwald, Noah F.; Miller, Geneva; Moen, Erick; Kong, Alex; Kagel, Adam; Dougherty, Thomas; Fullaway, Christine Camacho; McIntosh, Brianna J.; Leow, Ke Xuan; Schwartz, Morgan Sarah; Pavelchek, Cole; Cui, Sunny; Camplisson, Isabella; Bar-Tal, Omer; Singh, Jaiveer; Fong, Mara; Chaudhry, Gautam; Abraham, Zion; Moseley, Jackson; Warshawsky, Shiri; Soon, Erin; Greenbaum, Shirley; Risom, Tyler; Hollmann, Travis; Bendall, Sean C.; Keren, Leeat; Graf, William; Angelo, Michael; Van Valen, David
err分享
err收藏
NIH Image to ImageJ: 25 years of image analysisNIH Image to ImageJ: 25年的图像分析
err2012-06-28
err5.0W
errOAAI
errSchneider, Caroline A.; Rasband, Wayne S.; Eliceiri, Kevin W.
err分享
err收藏
学者 查看更多内容