The UCSC Genome Browser database: 2018 update

doi:10.1093/nar/gkx1020

2017-11-02

377

Jairo Navarro Gonzalez

David Gibson

Ian T. Fiddes

Christopher Eisenhart

DOI：10.1093/nar/gkx1020

原文链接

查看原文

摘要

En 中文

The UCSC Genome Browser (https://genome.ucsc.edu) provides a web interface for exploring annotated genome assemblies. The assemblies and annotation tracks are updated on an ongoing basis-12 assemblies and more than 28 tracks were added in the past year. Two recent additions are a display of CRISPR/Cas9 guide sequences and an interactive navigator for gene interactions. Other upgrades from the past year include a command-line version of the Variant Annotation Integrator, support for Human Genome Variation Society variant nomenclature input and output, and a revised highlighting tool that now supports multiple simultaneous regions and colors.

Keyword:

COMPREHENSIVE RESOURCE

OFF-TARGET

KEGG

INTEGRATION

ANNOTATION

PROTEINS

CORUM

BASE

AI总结

对已上传原文的论文进行重点信息的提取，主要内容包括：简要概述、研究摘要、背景介绍、关键亮点、图文解析、展望与总结。

期刊

Nucleic Acids Research

IF:

13.1

论文数:

3.6W

被引数:

29.0W

机构

University of California System

学者数:

37.5W

论文数: 33.7W

被引数: 6.6K

引用论文

CORUM: the comprehensive resource of mammalian protein complexes

NUCLEIC ACIDS RESEARCH

IF13.1

2007-12-23

316

OAAI

Ruepp, Andreas; Brauner, Barbara; Dunger-Kaltenbach, Irmtraud; Frishman, Goar; Montrone, Corinna; Stransky, Michael; Waegele, Brigitte; Schmidt, Thorsten; Doudieu, Octave Noubibou; Mpflen, Volker Stu; Mewes, H. Werner

CRISPRscan: designing highly efficient sgRNAs for CRISPR-Cas9 targeting in vivo

NATURE METHODS

IF32.1

2015-08-31

959

OAAI

Moreno-Mateos, Miguel A.; Vejnar, Charles E.; Beaudoin, Jean-Denis; Fernandez, Juan P.; Mis, Emily K.; Khokha, Mustafa K.; Giraldez, Antonio J.

Probing the Gravitational Dependence of the Fine-Structure Constant from Observations of White Dwarf Stars

Universe

IF0

2017-03-30

OAAI

Matthew Bainbridge; Martin Barstow; Nicole Reindl; W.-Ü Tchang-Brillet; Thomas Ayres; John Webb; John Barrow; Jiting Hu; Jay Holberg; Simon Preval; Wim Ubachs; Vladimir Dzuba; Victor Flambaum; Vincent Dumont; Julian Berengut

Negatome 2.0: a database of non-interacting proteins derived by literature mining, manual annotation and protein structure analysis

NUCLEIC ACIDS RESEARCH

IF13.1

2013-11-08

127

OAAI

Blohm, Philipp; Frishman, Goar; Smialowski, Pawel; Goebels, Florian; Wachinger, Benedikt; Ruepp, Andreas; Frishman, Dmitrij

MatrixDB, the extracellular matrix interaction database: updated content, a new navigator and expanded functionalities

NUCLEIC ACIDS RESEARCH

IF13.1

2014-11-06

OAAI

Launay, G.; Salza, R.; Multedo, D.; Thierry-Mieg, N.; Ricard-Blum, S.

The Genotype-Tissue Expression (GTEx) project 基因型-组织表达 (GTEx) 项目

NATURE GENETICS

IF31.8

2013-05-29

6.2K

OAAI

Lonsdale, John; Thomas, Jeffrey; Salvatore, Mike; Phillips, Rebecca; Lo, Edmund; Shad, Saboor; Hasz, Richard; Walters, Gary; Garcia, Fernando; Young, Nancy; Foster, Barbara; Moser, Mike; Karasik, Ellen; Gillard, Bryan; Ramsey, Kimberley; Sullivan, Susan; Bridge, Jason; Magazine, Harold; Syron, John; Fleming, Johnelle; Siminoff, Laura; Traino, Heather; Mosavel, Maghboeba; Barker, Laura; Jewell, Scott; Rohrer, Dan; Maxim, Dan; Filkins, Dana; Harbach, Philip; Cortadillo, Eddie; Berghuis, Bree; Turner, Lisa; Hudson, Eric; Feenstra, Kristin; Sobin, Leslie; Robb, James; Branton, Phillip; Korzeniewski, Greg; Shive, Charles; Tabor, David; Qi, Liqun; Groch, Kevin; Nampally, Sreenath; Buia, Steve; Zimmerman, Angela; Smith, Anna; Burges, Robin; Robinson, Karna; Valentino, Kim; Bradbury, Deborah; Cosentino, Mark; Diaz-Mayoral, Norma; Kennedy, Mary; Engel, Theresa; Williams, Penelope; Erickson, Kenyon; Ardlie, Kristin; Winckler, Wendy; Getz, Gad; DeLuca, David; MacArthur, Daniel; Kellis, Manolis; Thomson, Alexander; Young, Taylor; Gelfand, Ellen; Donovan, Molly; Meng, Yan; Grant, George; Mash, Deborah; Marcus, Yvonne; Basile, Margaret; Liu, Jun; Zhu, Jun; Tu, Zhidong; Cox, Nancy J.; Nicolae, Dan L.; Gamazon, Eric R.; Im, Hae Kyung; Konkashbaev, Anuar; Pritchard, Jonathan; Stevens, Matthew; Flutre, Timothee; Wen, Xiaoquan; Dermitzakis, Emmanouil T.; Lappalainen, Tuuli; Guigo, Roderic; Monlong, Jean; Sammeth, Michael; Koller, Daphne; Battle, Alexis; Mostafavi, Sara; McCarthy, Mark; Rivas, Manual; Maller, Julian; Rusyn, Ivan; Nobel, Andrew; Wright, Fred; Shabalin, Andrey; Feolo, Mike; Sharopova, Nataliya; Sturcke, Anne; Paschal, Justin; Anderson, James M.; Wilder, Elizabeth L.; Derr, Leslie K.; Green, Eric D.; Struewing, Jeffery P.; Temple, Gary; Volpi, Simona; Boyer, Joy T.; Thomson, Elizabeth J.; Guyer, Mark S.; Cathy Ng; Abdallah, Assya; Colantuoni, Deborah; Insel, Thomas R.; Koester, Susan E.; Little, A. Roger; Bender, Patrick K.; Lehner, Thomas; Yao, Yin; Compton, Carolyn C.; Vaught, Jimmie B.; Sawyer, Sherilyn; Lockhart, Nicole C.; Demchok, Joanne; Moore, Helen F.

Clear cell cancer of the ovary

Current Opinion in Oncology

IF0

2013-09-01

PREAI

Richard T. Penson; Don S. Dizon; Michael J. Birrer

Measurement of electromagnetic energy flow through a sparse particulate medium: A perspective

Journal of Quantitative Spectroscopy and Radiative Transfer

IF0

2013-07-01

OAAI

Michael I. Mishchenko

Gene Ontology Consortium: going forward 基因本体论联盟: 前进

NUCLEIC ACIDS RESEARCH

IF13.1

2014-11-26

1.2K

OAAI

Blake, J. A.; Christie, K. R.; Dolan, M. E.; Drabkin, H. J.; Hill, D. P.; Ni, L.; Sitnikov, D.; Burgess, S.; Buza, T.; Gresham, C.; McCarthy, F.; Pillai, L.; Wang, H.; Carbon, S.; Dietze, H.; Lewis, S. E.; Mungall, C. J.; Munoz-Torres, M. C.; Feuermann, M.; Gaudet, P.; Basu, S.; Chisholm, R. L.; Dodson, R. J.; Fey, P.; Mi, H.; Thomas, P. D.; Muruganujan, A.; Poudel, S.; Hu, J. C.; Aleksander, S. A.; McIntosh, B. K.; Renfro, D. P.; Siegele, D. A.; Attrill, H.; Brown, N. H.; Tweedie, S.; Lomax, J.; Osumi-Sutherland, D.; Parkinson, H.; Roncaglia, P.; Lovering, R. C.; Talmud, P. J.; Humphries, S. E.; Denny, P.; Campbell, N. H.; Foulger, R. E.; Chibucos, M. C.; Giglio, M. Gwinn; Chang, H. Y.; Finn, R.; Fraser, M.; Mitchell, A.; Nuka, G.; Pesseat, S.; Sangrador, A.; Scheremetjew, M.; Young, S. Y.; Stephan, R.; Harris, M. A.; Oliver, S. G.; Rutherford, K.; Wood, V.; Bahler, J.; Lock, A.; Kersey, P. J.; McDowall, M. D.; Staines, D. M.; Dwinell, M.; Shimoyama, M.; Laulederkind, S.; Hayman, G. T.; Wang, S. J.; Petri, V.; D'Eustachio, P.; Matthews, L.; Balakrishnan, R.; Binkley, G.; Cherry, J. M.; Costanzo, M. C.; Demeter, J.; Dwight, S. S.; Engel, S. R.; Hitz, B. C.; Inglis, D. O.; Lloyd, P.; Miyasato, S. R.; Paskov, K.; Roe, G.; Simison, M.; Nash, R. S.; Skrzypek, M. S.; Weng, S.; Wong, E. D.; Berardini, T. Z.; Li, D.; Huala, E.; Argasinska, J.; Arighi, C.; Auchincloss, A.; Axelsen, K.; Argoud-Puy, G.; Bateman, A.; Bely, B.; Blatter, M. C.; Bonilla, C.; Bougueleret, L.; Boutet, E.; Breuza, L.; Bridge, A.; Britto, R.; Casals, C.; Cibrian-Uhalte, E.; Coudert, E.; Cusin, I.; Duek-Roggli, P.; Estreicher, A.; Famiglietti, L.; Gane, P.; Garmiri, P.; Gos, A.; Gruaz-Gumowski, N.; Hatton-Ellis, E.; Hinz, U.; Hulo, C.; Huntley, R.; Jungo, F.; Keller, G.; Laiho, K.; Lemercier, P.; Lieberherr, D.; MacDougall, A.; Magrane, M.; Martin, M.; Masson, P.; Mutowo, P.; O'Donovan, C.; Pedruzzi, I.; Pichler, K.; Poggioli, D.; Poux, S.; Rivoire, C.; Roechert, B.; Sawford, T.; Schneider, M.; Shypitsyna, A.; Stutz, A.; Sundaram, S.; Tognolli, M.; Wu, C.; Xenarios, I.; Chan, J.; Kishore, R.; Sternberg, P. W.; Van Auken, K.; Muller, H. M.; Done, J.; Li, Y.; Howe, D.; Westerfield, M.

KEGG: new perspectives on genomes, pathways, diseases and drugs KEGG: 基因组，途径，疾病和药物的新观点

NUCLEIC ACIDS RESEARCH

IF13.1

2016-11-28

6.2K

OAAI

Kanehisa, Minoru; Furumichi, Miho; Tanabe, Mao; Sato, Yoko; Morishima, Kanae

查看更多内容