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TreeFam:: 2008 update

delete2007-12-23
delete295
delete
OA
AI
J
Jue Ruan
H
Heng Li
Z
Zhongzhong Chen
A
Avril Coghlan
L
Lachlan Coin
G
Guo, Yiran
J
Jean-Karim Hèriché
H
Hu, Yafeng
K
Karsten Kristiansen
L
Li, Ruiqiang
L
Liu, Tao
M
Moses, Alan
J
Junjie Qin
S
Søren Vang
A
Albert J. Vilella
U
Ureta-Vidal, Abel
B
Bolund, Lars
W
Wang, Jun
R
Richard Durbin *
DOI：10.1093/nar/gkm1005delete
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摘要

摘要

En 中文
TreeFam (http://www.treefam.org) was developed to provide curated phylogenetic trees for all animal gene families, as well as orthologue and paralogue assignments. Release 4.0 of TreeFam contains curated trees for 1314 families and automatically generated trees for another 14 351 families. We have expanded TreeFam to include 25 fully sequenced animal genomes, as well as four genomes from plant and fungal outgroup species. We have also introduced more accurate approaches for automatically grouping genes into families, for building phylogenetic trees, and for inferring orthologues and paralogues. The user interface for viewing phylogenetic trees and family information has been improved. Furthermore, a new perl API lets users easily extract data from the TreeFam mysql database.
Keyword:
PHYLOGENETIC TREES
DATABASE
GENOME
ORTHOLOGS
SEQUENCE
RESOURCE
INFORMATION
PARALOGS
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期刊

Nucleic Acids Research 封面图
Nucleic Acids Research
IF:
13.1
论文数:
3.6W
被引数:
29.0W

机构

B
beijing institute of genomics, cas
学者数:
1.1K
论文数: 564
被引数: 0
A
Aarhus University
学者数:
4.3W
论文数: 4.2W
被引数: 4.8W
U
University of Southern Denmark
学者数:
2.1W
论文数: 2.0W
被引数: 2.9W
W
wellcome trust sanger institute
学者数:
6.9K
论文数: 4.3K
被引数: 17
C
chinese academy of sciences
学者数:
56.7W
论文数: 45.0W
被引数: 704
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