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A fully automatic method yielding initial models from high-resolution cryo-electron microscopy maps

delete2018-10-30
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T
Thomas C. Terwilliger *
P
Paul D. Adams
P
Pavel V. Afonine
O
Oleg V. Sobolev
DOI:10.1038/s41592-018-0173-1delete
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Abstract

Abstract

En 中文
We report a fully automated procedure for the optimization and interpretation of reconstructions from cryo-electron microscopy (cryo-EM) data, available in Phenix as phenix. map_to_model. We applied our approach to 476 datasets with resolution of 4.5 angstrom or better, including reconstructions of 47 ribosomes and 32 other protein-RNA complexes. The median fraction of residues in the deposited structures reproduced automatically was 71% for reconstructions determined at resolutions of 3 angstrom or better and 47% for those at resolutions worse than 3 angstrom.
Keywords:
CRYO-EM STRUCTURE
SEQUENCE ASSIGNMENT
REFINEMENT
COMPLEX
SYSTEM
PHENIX
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Journal

Nature Methods cover
Nature Methods
IF:
32.1
Papers:
7.2K
Citations:
12.7W

Organization

U
united states department of energy (doe)
Scholars:
11.3W
Papers: 9.6W
Citations: 246