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Avoiding a replication crisis in deep-learning-based bioimage analysis

delete2021-10-04
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R
Romain F. Laine
I
Ignacio Arganda‐Carreras
R
Ricardo Henriques
G
Guillaume Jacquemet *
DOI:10.1038/s41592-021-01284-3delete
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Abstract

Abstract

En 中文
Deep learning algorithms are powerful tools for analyzing, restoring and transforming bioimaging data. One promise of deep learning is parameter-free one-click image analysis with expert-level performance in a fraction of the time previously required. However, as with most emerging technologies, the potential for inappropriate use is raising concerns among the research community. In this Comment, we discuss key concepts that we believe are important for researchers to consider when using deep learning for their microscopy studies. We describe how results obtained using deep learning can be validated and propose what should, in our view, be considered when choosing a suitable tool. We also suggest what aspects of a deep learning analysis should be reported in publications to ensure reproducibility. We hope this perspective will foster further discussion among developers, image analysis specialists, users and journal editors to define adequate guidelines and ensure the appropriate use of this transformative technology.
Keywords:
IMAGE
PLATFORM
PUBLICATION
GUIDELINES
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Journal

Nature Methods cover
Nature Methods
IF:
32.1
Papers:
7.2K
Citations:
12.7W

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instituto gulbenkian de ciencia
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U
University College London
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7.9W
Papers: 6.2W
Citations: 15.7W
M
MRC Laboratory Molecular Biology
Scholars:
3.1K
Papers: 2.5K
Citations: 38
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