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Data-driven batch detection enhances single-cell omics data analysis

delete2024-10-01
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PRE
AI
Z
Ziqi Zhang
X
Xiuwei Zhang *
DOI:10.1016/j.cels.2024.09.011delete
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Abstract

Abstract

En 中文
In single-cell omics studies, data are typically collected across multiple batches, resulting in batch effects: technical confounders that introduce noise and distort data distribution. Correcting these effects is challenging due to their unknown sources, nonlinear distortions, and the difficulty of accurately assigning data to batches that are optimal for integration methods.

Journal

Cell Systems cover
Cell Systems
IF:
7.7
Papers:
1.4K
Citations:
1.0W

Organization

No organization information available
Cited Papers

Cited Papers

Comprehensive Integration of Single-Cell Data
errCell
IF0
err2019-06-01
err0
errOAAI
errTim Stuart; Andrew Butler; Paul Hoffman; Christoph Hafemeister; Efthymia Papalexi; William M. Mauck; Yuhan Hao; Marlon Stoeckius; Peter Smibert; Rahul Satija
errShare
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errShare
errSave
Automated single-cell omics end-to-end framework with data-driven batch inference
err2024-10-01
err2
PREAI
errThistlethwaite, William; Tadych, Alicja; Ruf-Zamojski, Frederique; Bernard, Daniel J.; Cappuccio, Antonio; Zaslavsky, Elena; Chen, Xi; Sealfon, Stuart C.; Troyanskaya, Olga G.
errShare
errSave
Deep generative modeling for single-cell transcriptomics
err2018-11-30
err1.1K
errOAAI
errLopez, Romain; Regier, Jeffrey; Cole, Michael B.; Jordan, Michael I.; Yosef, Nir
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scMoMaT jointly performs single cell mosaic integration and multi-modal bio-marker detection
err2023-01-24
err11
errOAAI
errZhang, Ziqi; Sun, Haoran; Mariappan, Ragunathan; Chen, Xi; Chen, Xinyu; Jain, Mika S.; Efremova, Mirjana; Teichmann, Sarah A.; Rajan, Vaibhav; Zhang, Xiuwei
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Single-cell atlases: shared and tissue-specific cell types across human organs
err2022-02-25
err77
PREAI
errElmentaite, Rasa; Conde, Cecilia Dominguez; Yang, Lu; Teichmann, Sarah A.
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Jointly defining cell types from multiple single-cell datasets using LIGER
err2020-10-12
err90
errOAAI
errLiu, Jialin; Gao, Chao; Sodicoff, Joshua; Kozareva, Velina; Macosko, Evan Z.; Welch, Joshua D.
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