Xiuwei Zhang - Publications, H-index & Citations

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Xiuwei Zhang

Ecole Polytechnique Federale de Lausanne

15H-index

72Paper Count

967Citation Count

Published Papers 16

Publication Date

Data-driven batch detection enhances single-cell omics data analysis

CELL SYSTEMS

IF7.7

2024-10-01

PREAI

Zhang, Ziqi; Zhang, Xiuwei

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scDisInFact: disentangled learning for integration and prediction of multi-batch multi-condition single-cell RNA-sequencing data

NATURE COMMUNICATIONS

IF15.7

2024-01-30

OAAI

Zhang, Ziqi; Zhao, Xinye; Bindra, Mehak; Qiu, Peng; Zhang, Xiuwei

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LinRace: cell division history reconstruction of single cells using paired lineage barcode and gene expression data

NATURE COMMUNICATIONS

IF15.7

2023-12-16

OAAI

Pan, Xinhai; Li, Hechen; Putta, Pranav; Zhang, Xiuwei

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scMoMaT jointly performs single cell mosaic integration and multi-modal bio-marker detection

NATURE COMMUNICATIONS

IF15.7

2023-01-24

OAAI

Zhang, Ziqi; Sun, Haoran; Mariappan, Ragunathan; Chen, Xi; Chen, Xinyu; Jain, Mika S.; Efremova, Mirjana; Teichmann, Sarah A.; Rajan, Vaibhav; Zhang, Xiuwei

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Exclusion of plant input affects the temperature sensitivity of soil organic carbon decomposition

ECOLOGICAL INDICATORS

IF7.4

2022-09-01

OAAI

Zhang, Xiuwei; Zhu, Biao; Yu, Fei-Hai; Wang, Peng; Cheng, Weixin

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scDART: integrating unmatched scRNA-seq and scATAC-seq data and learning cross-modality relationship simultaneously

GENOME BIOLOGY

IF9.4

2022-06-27

OAAI

Zhang, Ziqi; Yang, Chengkai; Zhang, Xiuwei

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TedSim: temporal dynamics simulation of single-cell RNA sequencing data and cell division history

NUCLEIC ACIDS RESEARCH

IF13.1

2022-04-12

OAAI

Pan, Xinhai; Li, Hechen; Zhang, Xiuwei

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Inference of high-resolution trajectories in single-cell RNA-seq data by using RNA velocity

CELL REPORTS METHODS

IF4.5

2021-10-01

OAAI

Zhang, Ziqi; Zhang, Xiuwei

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CD4+ and CD8+ cytotoxic Tlymphocytes may induce mesenchymal cell apoptosis in IgG4-related disease

JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

IF11.2

2021-01-01

OAAI

Perugino, Cory A.; Kaneko, Naoki; Maehara, Takashi; Mattoo, Hamid; Kers, Jesper; Allard-Chamard, Hugues; Mahajan, Vinay S.; Liu, Hang; Della-Torre, Emanuel; Murphy, Samuel J. H.; Ghebremichael, Musie; Wallace, Zachary S.; Bolster, Marcy B.; Harvey, Liam M.; Mylvaganam, Geetha; Tuncay, Yesim; Liang, Lloyd; Montesi, Sydney B.; Zhang, Xiuwei; Tinju, Akira; Mochizuki, Keita; Munemura, Ryusuke; Sakamoto, Mizuki; Moriyama, Masafumi; Nakamura, Seiji; Yosef, Nir; Stone, John H.; Pillai, Shiv

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Simulating multiple faceted variability in single cell RNA sequencing

NATURE COMMUNICATIONS

IF15.7

2019-06-13

OAAI

Zhang, Xiuwei; Xu, Chenling; Yosef, Nir

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Single-cell RNA-sequencing resolves self-antigen expression during mTEC development

SCIENTIFIC REPORTS

IF3.9

2018-01-12

OAAI

Miragaia, Ricardo J.; Zhang, Xiuwei; Gomes, Tomas; Svensson, Valentine; Ilicic, Tomislav; Henriksson, Johan; Kar, Gozde; Lonnberg, Tapio

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Systems Biology: A new way to build cell lineages

ELIFE

IF0

2017-03-23

OAAI

Zhang, Xiuwei; Yosef, Nir

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NEMo: An Evolutionary Model With Modularity for PPI Networks

IEEE TRANSACTIONS ON NANOBIOSCIENCE

IF4.4

2017-03-01

PREAI

Ye, Min; Zhang, Xiuwei; Racz, Gabriela C.; Jiang, Qijia; Moret, Bernard M. E.

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Accounting for technical noise in single-cell RNA-seq experiments (vol 10, pg 1093, 2013)

NATURE METHODS

IF32.1

2014-01-30

OAAI

Brennecke, Philip; Anders, Simon; Kim, Jong Kyoung; Kolodziejczyk, Aleksandra A.; Zhang, Xiuwei; Proserpio, Valentina; Baying, Bianka; Benes, Vladimir; Teichmann, Sarah A.; Marioni, John C.; Heisler, Marcus G.

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Evolution of protein structures and interactions from the perspective of residue contact networks

CURRENT OPINION IN STRUCTURAL BIOLOGY

IF7

2013-12-01

PREAI

Zhang, Xiuwei; Perica, Tina; Teichmann, Sarah A.

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Analysis of Coevolving Gene Families Using Mutually Exclusive Orthologous Modules

GENOME BIOLOGY AND EVOLUTION

IF2.8

2011-04-17

OAAI

Zhang, Xiuwei; Kupiec, Martin; Gophna, Uri; Tuller, Tamir

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Research Directions