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The Reactome Knowledgebase 2026

delete2025-11-01
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PRE
AI
E
Eliot Ragueneau
C
Chuqiao Gong
P
Pierre Sinquin
C
Cristoffer Sevilla
D
Deidre Beavers
A
Alexander Grentner
J
Johannes Griss
G
Gregory Hogue
N
Nancy T. Li
L
Lisa Matthews
B
Bruce May
M
M Orlic-Milacic
H
Helia Mohammadi
R
Robert Petryszak
K
Karen Rothfels
V
Veronica Shamovsky
S
Stephan, Ralf
K
Krishna Kumar Tiwari
J
Joel Weiser
A
Adam Wright
M
Marc Gillespie
G
Guanming Wu
L
Lincoln Stein
H
Henning Hermjakob
P
Peter D’Eustachio *
DOI:10.1093/nar/gkaf1223delete
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Abstract

Abstract

En 中文
The Reactome Knowledgebase (https://reactome.org) is a freely accessible, expert-curated, open-source, and open-data resource that describes human biology in molecular detail. It spans normal physiology as well as disease mechanisms, including the impact of genetic variation and drug action. Reactome content is continuously expanded and revised, with automated workflows now monitoring retracted publications to maintain data integrity. To meet the needs of a growing user base, Reactome has launched a redesigned Angular-based interface with enhanced accessibility, modular architecture, and a hierarchy of visualization tools: ReacFoam for global pathway overviews, enhanced high-level diagrams for intuitive navigation, and redesigned entity level views (ELVs) enriched with chemical structures, animated protein models, and a new compare mode to contrast normal and disease states. New analysis tools support multi-omics integration and customizable visualizations. Recent innovations include the React-to-me chatbot for natural language interaction, community-driven tutorials, and an open Figma icon library. Reactome's sustainability and compliance with FAIR data principles were recently recognized with CoreTrustSeal certification and its designation as a Global Core Biodata and ELIXIR resource, reinforcing its role as a trusted global knowledgebase.

Journal

Nucleic Acids Research cover
Nucleic Acids Research
IF:
13.1
Papers:
3.6W
Citations:
29.0W

Organization

European Bioinformatics Institute cover
European Bioinformatics Institute
Scholars:
1.2K
Papers: 605
Citations: 1.4W
M
Medical University of Vienna
Scholars:
3.7W
Papers: 2.5W
Citations: 3.1W
E
european molecular biology laboratory (embl)
Scholars:
8.3K
Papers: 5.1K
Citations: 31
O
Ontario Institute for Cancer Research
Scholars:
1.3K
Papers: 692
Citations: 4.6K
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Cited Papers

Cited Papers

Cytoscape.js 2023 update: a graph theory library for visualization and analysis
err2023-01-16
err0
errOAAI
errMax Franz; Christian T Lopes; Dylan Fong; Mike Kucera; Manfred Cheung; Metin Can Siper; Gerardo Huck; Yue Dong; Onur Sumer; Gary D Bader
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Reactome enhanced pathway visualization
err2017-07-06
err0
errOAAI
errKonstantinos Sidiropoulos; Guilherme Viteri; Cristoffer Sevilla; Steve Jupe; Marissa Webber; Marija Orlic-Milacic; Bijay Jassal; Bruce May; Veronica Shamovsky; Corina Duenas; Karen Rothfels; Lisa Matthews; Heeyeon Song; Lincoln Stein; Robin Haw; Peter D’Eustachio; Peipei Ping; Henning Hermjakob; Antonio Fabregat
errShare
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Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures
err2021-05-06
err587
errOAAI
errSehnal, David; Bittrich, Sebastian; Deshpande, Mandar; Svobodova, Radka; Berka, Karel; Bazgier, Vaclav; Velankar, Sameer; Burley, Stephen K.; Koca, Jaroslav; Rose, Alexander S.
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KEGG: new perspectives on genomes, pathways, diseases and drugs
err2016-11-28
err6.2K
errOAAI
errKanehisa, Minoru; Furumichi, Miho; Tanabe, Mao; Sato, Yoko; Morishima, Kanae
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Rhea, the reaction knowledgebase in 2022
err2021-11-10
err93
errOAAI
errBansal, Parit; Morgat, Anne; Axelsen, Kristian B.; Muthukrishnan, Venkatesh; Coudert, Elisabeth; Aimo, Lucila; Hyka-Nouspikel, Nevila; Gasteiger, Elisabeth; Kerhornou, Arnaud; Neto, Teresa Batista; Pozzato, Monica; Blatter, Marie-Claude; Ignatchenko, Alex; Redaschi, Nicole; Bridge, Alan
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3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources
err2022-11-30
err6
errOAAI
errVaradi, Mihaly; Nair, Sreenath; Sillitoe, Ian; Tauriello, Gerardo; Anyango, Stephen; Bienert, Stefan; Borges, Clemente; Deshpande, Mandar; Green, Tim; Hassabis, Demis; Hatos, Andras; Hegedus, Tamas; Hekkelman, Maarten L.; Joosten, Robbie; Jumper, John; Laydon, Agata; Molodenskiy, Dmitry; Piovesan, Damiano; Salladini, Edoardo; Salzberg, Steven L.; Sommer, Markus J.; Steinegger, Martin; Suhajda, Erzsebet; Svergun, Dmitri; Tenorio-Ku, Luiggi; Tosatto, Silvio; Tunyasuvunakool, Kathryn; Waterhouse, Andrew Mark; Zidek, Augustin; Schwede, Torsten; Orengo, Christine; Velankar, Sameer
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PDBe aggregated API: programmatic access to an integrative knowledge graph of molecular structure data
err2021-06-03
err0
errOAAI
errSreenath Nair; Mihály Váradi; Nurul Nadzirin; Lukáš Pravda; Stephen Anyango; Saqib Mir; John Berrisford; David Armstrong; Aleksandras Gutmanas; Sameer Velankar
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Highly accurate protein structure prediction with AlphaFold
err2021-07-15
err0
errOAAI
errJohn Jumper; Richard Evans; Alexander Pritzel; Tim Green; Michael Figurnov; Olaf Ronneberger; Kathryn Tunyasuvunakool; Russ Bates; Augustin Žídek; Anna Potapenko; Alex Bridgland; Clemens Meyer; Simon A. A. Kohl; Andrew J. Ballard; Andrew Cowie; Bernardino Romera-Paredes; Stanislav Nikolov; Rishub Jain; Jonas Adler; Trevor Back; Stig Petersen; David Reiman; Ellen Clancy; Michal Zielinski; Martin Steinegger; Michalina Pacholska; Tamas Berghammer; Sebastian Bodenstein; David Silver; Oriol Vinyals; Andrew W. Senior; Koray Kavukcuoglu; Pushmeet Kohli; Demis Hassabis
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The Systems Biology Graphical Notation
err2009-08-07
err664
errOAAI
errLe Novere, Nicolas; Hucka, Michael; Mi, Huaiyu; Moodie, Stuart; Schreiber, Falk; Sorokin, Anatoly; Demir, Emek; Wegner, Katja; Aladjem, Mirit I.; Wimalaratne, Sarala M.; Bergman, Frank T.; Gauges, Ralph; Ghazal, Peter; Kawaji, Hideya; Li, Lu; Matsuoka, Yukiko; Villeger, Alice; Boyd, Sarah E.; Calzone, Laurence; Courtot, Melanie; Dogrusoz, Ugur; Freeman, Tom C.; Funahashi, Akira; Ghosh, Samik; Jouraku, Akiya; Kim, Sohyoung; Kolpakov, Fedor; Luna, Augustin; Sahle, Sven; Schmidt, Esther; Watterson, Steven; Wu, Guanming; Goryanin, Igor; Kell, Douglas B.; Sander, Chris; Sauro, Herbert; Snoep, Jacky L.; Kohn, Kurt; Kitano, Hiroaki
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