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Joint Genome Institute - Jgi

Scholars429
Papers289
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Related Papers (289)
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A single genomic region controls primocane fruiting in tetraploid blackberry
err2026-04-01
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PREAI
errSilva-Cordoba, Alexander; Vaughn, Isabella; Chizk, T. Mason; Nelson, Lacy; Johns, Carmen; Thompson, Ellen; Bassil, Nahla; Hardigan, Michael; Clark, John; Bruna, Tomas; Mollinari, Marcelo; Worthington, Margaret
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Gene and genome duplications have contrasting impacts on biosynthetic and flower developmental pathways in California poppy
err2026-03-01
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PREAI
errRoessner, Le-Han; Roessner, Clemens; Kong, Doudou; Lotz, Dominik; Weisert, Andrea; Yamada, Yasuyuki; Sato, Fumihiko; Davies, Kevin; Rupp, Oliver; Fuchs, Joerg; Baldwin, Ethan A.; Lovell, John; McKain, Michael R.; Barry, Kerrie; Bruna, Tomas; Talag, Jayson; Jenkins, Jerry; Walstead, Rachel; Grimwood, Jane; Schmutz, Jeremy; Leebens-Mack, James H.; Becker, Annette
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Transcriptional and metabolic stasis define desiccation-induced dormancy in the soil bacterium Arthrobacter sp. AZCC_0090 until water vapor initiates resuscitation
err2026-02-01
err1
PREAI
errCarini, Paul; Gomez-Buckley, Adriana; Guerrero, Christina R.; Kridler, Melanie R.; Viney, Isabella A.; Aminitabrizi, Roya; Tfaily, Malak M.; Moma, Peter; Meredith, Laura K.; Louie, Katherine B.; Bowen, Benjamin P.; Northen, Trent R.; Snoeyenbos-West, Oona; Bartelme, Ryan P.
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Multi-Omics Analyses Reveal Divergent Molecular Mechanisms Underlying Plant Biomass Conversion by Five Fungi
err2025-12-18
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errPeng, Mao; Li, Jiajia; Xu, Li; Chroumpi, Tania; Garrigues, Sandra; Kun, Roland S.; Meng, Jiali; Aguilar-pontes, Maria Victoria; Lipzen, Anna; Ng, Vivian; Clendinen, Chaevien S.; Tolic, Nikola; Baker, Scott E.; Grigoriev, Igor V.; de Vries, Ronald P.
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The reference genome for the northeastern Pacific bull kelp, Nereocystis luetkeana
err2025-11-01
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PREAI
errAlves-Lima, Cicero; Montecinos, Gabriel; Escalona, Merly; Calhoun, Sara; Marimuthu, Mohan; Nguyen, Oanh; Beraut, Eric; Lipzen, Anna; Grigoriev, Igor, V; Raimondi, Peter; Nuzhdin, Sergey; Alberto, Filipe
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Depth-resolved paired metagenomes and metatranscriptomes from the Lake Erie 'dead zone'
err2025-11-01
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PREAI
errBrown, Katelyn M.; Beall, Benjamin F. N.; Bullerjahn, George S.; Finlay, Jacques C.; Del Rio, Tijana Glavina; Small, Gaston E.; Sterner, Robert W.; McKay, R. Michael
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Plastid-nuclear coevolution of ribosomal protein genes in papilionoid legumes
err2025-03-01
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PREAI
errTressel, Lydia G.; Shrestha, Bikash; Lee, Chaehee; Choi, In-Su; Ruhlman, Tracey A.; Cardoso, Domingos; Wojciechowski, Martin F.; Jansen, Robert K.
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Characterisation and comparative analysis of mitochondrial genomes of false, yellow, black and blushing morels provide insights on their structure and evolution
err2025-02-21
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errOAAI
errTao, Gang; Ahrendt, Steven; Miyauchi, Shingo; Zhu, Xiaojie; Peng, Hao; Labutti, Kurt; Clum, Alicia; Hayes, Richard; Chain, Patrick S. G.; Grigoriev, Igor, V; Bonito, Gregory; Martin, Francis M.
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Genome and transcriptome analysis of the lignite-degrading Trichoderma cf. simile WF8 strain highlights potential degradation mechanisms
err2025-02-01
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PREAI
errYao, Jinghua; Chen, Yajuan; Zhuo, Deyu; Chen, Siqiao; Xu, Baichao; Yan, Congwei; Li, Wanrong; Feng, Hui; Deng, Sheng; Cai, Feng M.; Steindorff, Andrei S.; Druzhinina, Irina S.; Xiao, Lei; Wei, Lihui; Daly, Paul
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Allopolyploidy expanded gene content but not pangenomic variation in the hexaploid oilseed Camelina sativa
err2024-11-15
err2
errOAAI
errBird, Kevin A.; Brock, Jordan R.; Grabowski, Paul P.; Harder, Avril M.; Healy, Adam L.; Shu, Shengqiang; Barry, Kerrie; Boston, Loribeth; Daum, Christopher; Guo, Jie; Lipzen, Anna; Walstead, Rachel; Grimwood, Jane; Schmutz, Jeremy; Lu, Chaofu; Comai, Luca; Mckay, John K.; Pires, J. Chris; Edger, Patrick P.; Lovell, John T.; Kliebenstein, Daniel J.
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Genomic insights into redox-driven microbial processes for carbon decomposition in thawing Arctic soils and permafrost
errMSPHERE
IF3.1
err2024-07-30
err2
errOAAI
errLi, Yaoming; Xue, Yaxin; Chowdhury, Taniya Roy; Graham, David E.; Tringe, Susannah G.; Jansson, Janet K.; Tas, Neslihan
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Time-series metagenomics reveals changing protistan ecology of a temperate dimictic lake
err2024-07-20
err1
errOAAI
errKrinos, Arianna I.; Bowers, Robert M.; Rohwer, Robin R.; McMahon, Katherine D.; Woyke, Tanja; Schulz, Frederik
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Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi
err2024-06-28
err1
errOAAI
errBaroncelli, Riccardo; Cobo-Diaz, Jose F.; Benocci, Tiziano; Peng, Mao; Battaglia, Evy; Haridas, Sajeet; Andreopoulos, William; Labutti, Kurt; Pangilinan, Jasmyn; Lipzen, Anna; Koriabine, Maxim; Bauer, Diane; Le Floch, Gaetan; Makela, Miia R.; Drula, Elodie; Henrissat, Bernard; Grigoriev, Igor, V; Crouch, Jo Anne; de Vries, Ronald P.; Sukno, Serenella A.; Thon, Michael R.
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BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS, and TSEBRA
err2024-06-12
err52
errOAAI
errGabriel, Lars; Bruna, Tomas; Hoff, Katharina J.; Ebel, Matthis; Lomsadze, Alexandre; Borodovsky, Mark; Stanke, Mario
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Microbial Ecology and Site Characteristics Underlie Differences in Salinity-Methane Relationships in Coastal Wetlands
err2024-06-06
err0
errOAAI
errBueno de Mesquita, Clifton P.; Hartman, Wyatt H.; Ardon, Marcelo; Bernhardt, Emily S.; Neubauer, Scott C.; Weston, Nathaniel B.; Tringe, Susannah G.
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Dynamic enhancer landscapes in human craniofacial development
err2024-03-06
err2
errOAAI
errRajderkar, Sudha Sunil; Paraiso, Kitt; Amaral, Maria Luisa; Kosicki, Michael; Cook, Laura E.; Darbellay, Fabrice; Spurrell, Cailyn H.; Osterwalder, Marco; Zhu, Yiwen; Wu, Han; Afzal, Sarah Yasmeen; Blow, Matthew J.; Kelman, Guy; Barozzi, Iros; Fukuda-Yuzawa, Yoko; Akiyama, Jennifer A.; Afzal, Veena; Tran, Stella; Plajzer-Frick, Ingrid; Novak, Catherine S.; Kato, Momoe; Hunter, Riana D.; von Maydell, Kianna; Wang, Allen; Lin, Lin; Preissl, Sebastian; Lisgo, Steven; Ren, Bing; Dickel, Diane E.; Pennacchio, Len A.; Visel, Axel
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Comparative Pangenomic Insights into the Distinct Evolution of Virulence Factors Among Grapevine Trunk Pathogens
err2024-02-01
err4
errOAAI
errGarcia, Jadran F.; Morales-Cruz, Abraham; Cochetel, Noe; Minio, Andrea; Figueroa-Balderas, Rosa; Rolshausen, Philippe E.; Baumgartner, Kendra; Cantu, Dario
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Genotypic diversity of Coffea canephora cv. Conilon identified through leaf morpho- and eco-physiological traits
err2024-01-01
err3
errOAAI
errdos Santos, Millena Monteiro; Oliveira, Marcos Goes; Cassol, Daniela; Rodrigues, Weverton Pereira; Falqueto, Antelmo Ralph; Ramalho, Jose Cochicho; Partelli, Fabio Luiz
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