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Severus detects somatic structural variation and complex rearrangements in cancer genomes using long-read sequencing Keskus, Ayse G.; Bryant, Asher; Ahmad, Tanveer; Yoo, Byunggil; Aganezov, Sergey; Goretsky, Anton; Donmez, Ataberk; Lansdon, Lisa A.; Rodriguez, Isabel; Park, Jimin; Liu, Yuelin; Cui, Xiwen; Gardner, Joshua; McNulty, Brandy; Sacco, Samuel; Shetty, Jyoti; Zhao, Yongmei; Tran, Bao; Narzisi, Giuseppe; Helland, Adrienne; Cook, Daniel E.; Chang, Pi-Chuan; Kolesnikov, Alexey; Carroll, Andrew; Molloy, Erin K.; Bi, Chengpeng; Walter, Adam; Gibson, Margaret; Pushel, Irina; Guest, Erin; Pastinen, Tomi; Shafin, Kishwar; Miga, Karen H.; Malikic, Salem; Day, Chi-Ping; Robine, Nicolas; Sahinalp, Cenk; Dean, Michael; Farooqi, Midhat S.; Paten, Benedict; Kolmogorov, Mikhail Share Save
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Inverted triplications formed by iterative template switches generate structural variant diversity at genomic disorder loci Grochowski, Christopher M.; Bengtsson, Jesse D.; Du, Haowei; Gandhi, Mira; Lun, Ming Yin; Mehaffey, Michele G.; Park, KyungHee; Hoeps, Wolfram; Benito, Eva; Hasenfeld, Patrick; Korbel, Jan O.; Mahmoud, Medhat; Paulin, Luis F.; Jhangiani, Shalini N.; Hwang, James Paul; Bhamidipati, Sravya V.; Muzny, Donna M.; Fatih, Jawid M.; Gibbs, Richard A.; Pendleton, Matthew; Harrington, Eoghan; Juul, Sissel; Lindstrand, Anna; Sedlazeck, Fritz J.; Pehlivan, Davut; Lupski, James R.; Carvalho, Claudia M. B. Share Save
Borg extrachromosomal elements of methane-oxidizing archaea have conserved and expressed genetic repertoires Schoelmerich, Marie C.; Ly, Lynn; West-Roberts, Jacob; Shi, Ling-Dong; Shen, Cong; Malvankar, Nikhil S.; Taib, Najwa; Gribaldo, Simonetta; Woodcroft, Ben J.; Schadt, Christopher W.; Al-Shayeb, Basem; Dai, Xiaoguang; Mozsary, Christopher; Hickey, Scott; He, Christine; Beaulaurier, John; Juul, Sissel; Sachdeva, Rohan; Banfield, Jillian F. Share Save
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High resolution long-read telomere sequencing reveals dynamic mechanisms in aging and cancer Schmidt, Tobias T.; Tyer, Carly; Rughani, Preeyesh; Haggblom, Candy; Jones, Jeffrey R.; Dai, Xiaoguang; Frazer, Kelly A.; Gage, Fred H.; Juul, Sissel; Hickey, Scott; Karlseder, Jan Share Save
Analysis and benchmarking of small and large genomic variants across tandem repeats English, Adam C.; Dolzhenko, Egor; Jam, Helyaneh Ziaei; Mckenzie, Sean K.; Olson, Nathan D.; De Coster, Wouter; Park, Jonghun; Gu, Bida; Wagner, Justin; Eberle, Michael A.; Gymrek, Melissa; Chaisson, Mark J. P.; Zook, Justin M.; Sedlazeck, Fritz J. Share Save
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Single-cell multi-omics defines the cell-type-specific impact of splicing aberrations in human hematopoietic clonal outgrowths Cortes-Lopez, Mariela; Chamely, Paulina; Hawkins, Allegra G.; Stanley, Robert F.; Swett, Ariel D.; Ganesan, Saravanan; Mouhieddine, Tarek H.; Dai, Xiaoguang; Kluegel, Lloyd; Chen, Celine; Batta, Kiran; Furer, Nili; Vedula, Rahul S.; Beaulaurier, John; Drong, Alexander W.; Hickey, Scott; Dusaj, Neville; Mullokandov, Gavriel; Stasiw, Adam M.; Su, Jiayu; Chaligne, Ronan; Juul, Sissel; Harrington, Eoghan; Knowles, David A.; Potenski, Catherine J.; Wiseman, Daniel H.; Tanay, Amos; Shlush, Liran; Lindsley, Robert C.; Ghobrial, Irene M.; Taylor, Justin; Abdel-Wahab, Omar; Gaiti, Federico; Landau, Dan A. Share Save
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Whole-genome sequencing of SARS-CoV-2 isolates from symptomatic and asymptomatic individuals in Tanzania Mziray, Shabani Ramadhani; van Zwetselaar, Marco; Kayuki, Charles C.; Mbelele, Peter M.; Makubi, Abel N.; Magesa, Alex S.; Kisonga, Riziki M.; Sonda, Tolbert B.; Kibiki, Gibson S.; Githinji, George; Heysell, Scott K.; Chilongola, Jaffu O.; Mpagama, Stellah G. Share Save
The power, potential, benefits, and challenges of implementing high-throughput sequencing in food safety systems Imanian, Behzad; Donaghy, John; Jackson, Tim; Gummalla, Sanjay; Ganesan, Balasubramanian; Baker, Robert C.; Henderson, Matthew; Butler, Emily K.; Hong, Yingying; Ring, Brendan; Thorp, Clare; Khaksar, Ramin; Samadpour, Mansour; Lawless, Kahlil A.; MacLaren-Lee, Iain; Carleton, Heather A.; Tian, Renmao; Zhang, Wei; Wan, Jason Share Save
Identifying synergistic high-order 3D chromatin conformations from genome-scale nanopore concatemer sequencing Deshpande, Aditya S.; Ulahannan, Netha; Pendleton, Matthew; Dai, Xiaoguang; Ly, Lynn; Behr, Julie M.; Schwenk, Stefan; Liao, Will; Augello, Michael A.; Tyer, Carly; Rughani, Priyesh; Kudman, Sarah; Tian, Huasong; Otis, Hannah G.; Adney, Emily; Wilkes, David; Mosquera, Juan Miguel; Barbieri, Christopher E.; Melnick, Ari; Stoddart, David; Turner, Daniel J.; Juul, Sissel; Harrington, Eoghan; Imielinski, Marcin Share Save
Accelerated identification of disease-causing variants with ultra-rapid nanopore genome sequencing Goenka, Sneha D.; Gorzynski, John E.; Shafin, Kishwar; Fisk, Dianna G.; Pesout, Trevor; Jensen, Tanner D.; Jean Monlong; Pi-Chuan Chang; Baid, Gunjan; Bernstein, Jonathan A.; Christle, Jeffrey W.; Dalton, Karen P.; Garalde, Daniel R.; Grove, Megan E.; Guillory, Joseph; Kolesnikov, Alexey; Nattestad, Maria; Ruzhnikov, Maura R. Z.; Samadi, Mehrzad; Sethia, Ankit; Spiteri, Elizabeth; Wright, Christopher J.; Xiong, Katherine; Zhu, Tong; Jain, Miten; Sedlazeck, Fritz J.; Carroll, Andrew; Paten, Benedict; Ashley, Euan A. Share Save
Ultrarapid Nanopore Genome Sequencing in a Critical Care Setting Gorzynski, John E.; Goenka, Sneha D.; Shafin, Kishwar; Jensen, Tanner D.; Fisk, Dianna G.; Grove, Megan E.; Spiteri, Elizabeth; Pesout, Trevor; Monlong, Jean; Baid, Gunjan; Bernstein, Jonathan A.; Ceresnak, Scott; Chang, Pi-Chuan; Christle, Jeffrey W.; Chubb, Henry; Dalton, Karen P.; Dunn, Kyla; Garalde, Daniel R.; Guillory, Joseph; Knowles, Joshua W.; Kolesnikov, Alexey; Ma, Michael; Moscarello, Tia; Nattestad, Maria; Perez, Marco; Ruzhnikov, Maura R. Z.; Samadi, Mehrzad; Setia, Ankit; Wright, Chris; Wusthoff, Courtney J.; Xiong, Katherine; Zhu, Tong; Jain, Miten; Sedlazeck, Fritz J.; Carroll, Andrew; Paten, Benedict; Ashley, Euan A. Share Save
Ancestral polymorphisms shape the adaptive radiation of Metrosideros across the Hawaiian Islands Choi, Jae Young; Dai, Xiaoguang; Alam, Ornob; Peng, Julie Z.; Rughani, Priyesh; Hickey, Scott; Harrington, Eoghan; Juul, Sissel; Ayroles, Julien F.; Purugganan, Michael D.; Stacy, Elizabeth A. Share Save
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