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Steven L. Salzberg

johns hopkins university

160H-index
598Paper Count
36.6WCitation Count
Published Papers 146
Publication Date
Efficient evidence-based genome annotation with EviAnn
err2026-07-03
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PREAI
errAleksey V. Zimin; Daniela Puiu; Mihaela Pertea; James A. Yorke; Steven L. Salzberg
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Annotating genomes at increased scale and resolution
err2026-02-17
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PREAI
errHyun Joo Ji; Mihaela Pertea; Steven L. Salzberg
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PSAURON: a tool for assessing protein annotation across a broad range of species
err2025-01-07
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errOAAI
errSommer, Markus J.; Zimin, Aleksey V.; Salzberg, Steven L.
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Metagenomic next generation sequencing of plasma RNA for diagnosis of unexplained, acute febrile illness in Uganda
err2024-09-19
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errOAAI
errKandathil, Abraham J.; Blair, Paul W.; Lu, Jennifer; Anantharam, Raghavendran; Kobba, Kenneth; Robinson, Matthew L.; Alharthi, Sultanah; Ndawula, Edgar C.; Dumler, J. Stephen; Kakooza, Francis; Lamorde, Mohammed; Thomas, David L.; Salzberg, Steven L.; Manabe, Yukari C.
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Splam: a deep-learning-based splice site predictor that improves spliced alignments
err2024-09-16
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errOAAI
errChao, Kuan-Hao; Mao, Alan; Salzberg, Steven L.; Pertea, Mihaela
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Metagenome analysis using the Kraken software suite (vol 17, pg 2815, 2022)
err2024-08-29
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errOAAI
errLu, Jennifer; Rincon, Natalia; Wood, Derrick E.; Breitwieser, Florian P.; Pockrandt, Christopher; Langmead, Ben; Salzberg, Steven L.; Steinegger, Martin
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No Evidence of Chronic Infection in a Metagenomic Sequencing Study of the Keratoconus Corneal Epithelium
err2024-06-11
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errOAAI
errKaur, Pritpal; Moon, Loren; Srikumaran, Divya; Salzberg, Steven L.; Lu, Jennifer; Simner, Patricia J.; Soiberman, Uri S.
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Implementing governmental oversight of enhanced potential pandemic pathogen research
err2024-04-16
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errOAAI
errEbright, Richard H.; Macintyre, Raina; Dudley, Joseph P.; Butler, Colin D.; Goffinet, Andre; Hammond, Edward; Harris, Elisa D.; Kakeya, Hideki; Lambrinidou, Yanna; Leitenberg, Milton; Newman, Stuart A.; Nickels, Bryce E.; Rahalkar, Monali C.; Ridley, Matt W.; Salzberg, Steven L.; Seshadri, Harish; Theissen, Guenter; Vandongen, Antonius M.; Washburne, Alex
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Detecting differential transcript usage in complex diseases with SPIT
err2024-03-01
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errOAAI
errErdogdu, Beril; Varabyou, Ales; Hicks, Stephanie C.; Salzberg, Steven L.; Pertea, Mihaela
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Major data analysis errors invalidate cancer microbiome findings
errMBIO
IF4.7
err2023-10-31
err67
errOAAI
errGihawi, Abraham; Ge, Yuchen; Lu, Jennifer; Puiu, Daniela; Xu, Amanda; Cooper, Colin S.; Brewer, Daniel S.; Pertea, Mihaela; Salzberg, Steven L.
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Investigating open reading frames in known and novel transcripts using ORFanage
err2023-07-31
err7
errOAAI
errVarabyou, Ales; Erdogdu, Beril; Salzberg, Steven L.; Pertea, Mihaela
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Structure-guided isoform identification for the human transcriptome
err2022-12-15
err14
errOAAI
errSommer, Markus J.; Cha, Sooyoung; Varabyou, Ales; Rincon, Natalia; Park, Sukhwan; Minkin, Ilia; Pertea, Mihaela; Steinegger, Martin; Salzberg, Steven L.
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3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources
err2022-11-30
err6
errOAAI
errVaradi, Mihaly; Nair, Sreenath; Sillitoe, Ian; Tauriello, Gerardo; Anyango, Stephen; Bienert, Stefan; Borges, Clemente; Deshpande, Mandar; Green, Tim; Hassabis, Demis; Hatos, Andras; Hegedus, Tamas; Hekkelman, Maarten L.; Joosten, Robbie; Jumper, John; Laydon, Agata; Molodenskiy, Dmitry; Piovesan, Damiano; Salladini, Edoardo; Salzberg, Steven L.; Sommer, Markus J.; Steinegger, Martin; Suhajda, Erzsebet; Svergun, Dmitri; Tenorio-Ku, Luiggi; Tosatto, Silvio; Tunyasuvunakool, Kathryn; Waterhouse, Andrew Mark; Zidek, Augustin; Schwede, Torsten; Orengo, Christine; Velankar, Sameer
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Metagenome analysis using the Kraken software suite
err2022-09-28
err189
errOAAI
errLu, Jennifer; Rincon, Natalia; Wood, Derrick E.; Breitwieser, Florian P.; Pockrandt, Christopher; Langmead, Ben; Salzberg, Steven L.; Steinegger, Martin
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The Human Contaminome and Understanding Infectious Disease
err2022-09-08
err12
PREAI
errSimner, Patricia J.; Salzberg, Steven L.
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High-quality genome and methylomes illustrate features underlying evolutionary success of oaks
err2022-04-19
err45
errOAAI
errSork, Victoria L.; Cokus, Shawn J.; Fitz-Gibbon, Sorel T.; Zimin, Aleksey, V; Puiu, Daniela; Garcia, Jesse A.; Gugger, Paul F.; Henriquez, Claudia L.; Zhen, Ying; Lohmueller, Kirk E.; Pellegrini, Matteo; Salzberg, Steven L.
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Next-generation sequencing: insights to advance clinical investigations of the microbiome
err2022-04-01
err187
errOAAI
errWensel, Caroline R.; Pluznick, Jennifer L.; Salzberg, Steven L.; Sears, Cynthia L.
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