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Considerations for building and using integrated single-cell atlases Hrovatin, Karin; Sikkema, Lisa; Shitov, Vladimir A.; Heimberg, Graham; Shulman, Maiia; Oliver, Amanda J.; Mueller, Michaela F.; Ibarra, Ignacio L.; Wang, Hanchen; Ramirez-Suastegui, Ciro; He, Peng; Schaar, Anna C.; Teichmann, Sarah A.; Theis, Fabian J.; Luecken, Malte D. Share Save
Probe set selection for targeted spatial transcriptomics Kuemmerle, Louis B.; Luecken, Malte D.; Firsova, Alexandra B.; Andrade e Sousa, Lisa Barros de; Strasser, Lena; Mekki, Ilhem Isra; Campi, Francesco; Heumos, Lukas; Shulman, Maiia; Beliaeva, Valentina; Hediyeh-Zadeh, Soroor; Schaar, Anna C.; Mahbubani, Krishnaa T.; Sountoulidis, Alexandros; Balassa, Tamas; Kovacs, Ferenc; Horvath, Peter; Piraud, Marie; Erturk, Ali; Samakovlis, Christos; Theis, Fabian J. Share Save
Systemic alterations in neutrophils and their precursors in early-stage chronic obstructive pulmonary disease Kapellos, Theodore S.; Babler, Kevin; Fujii, Wataru; Nalkurthi, Christina; Schaar, Anna C.; Bonaguro, Lorenzo; Pecht, Tal; Galvao, Izabela; Agrawal, Shobhit; Saglam, Adem; Dudkin, Erica; Frishberg, Amit; de Domenico, Elena; Horne, Arik; Donovan, Chantal; Kim, Richard Y.; Gallego-Ortega, David; Gillett, Tessa E.; Ansari, Meshal; Schulte-Schrepping, Jonas; Offermann, Nina; Antignano, Ignazio; Sivri, Burcu; Lu, Wenying; Eapen, Mathew S.; van Uelft, Martina; Osei-Sarpong, Collins; van den Berge, Maarten; Donker, Hylke C.; Groen, Harry J. M.; Sohal, Sukhwinder S.; Klein, Johanna; Schreiber, Tina; Feisst, Andreas; Yildirim, Ali Oender; Schiller, Herbert B.; Nawijn, Martijn C.; Becker, Matthias; Haendler, Kristian; Beyer, Marc; Capasso, Melania; Ulas, Thomas; Hasenauer, Jan; Pizarro, Carmen; Theis, Fabian J.; Hansbro, Philip M.; Skowasch, Dirk; Schultze, Joachim L. Share Save
The scverse project provides a computational ecosystem for single-cell omics data analysis Virshup, Isaac; Bredikhin, Danila; Heumos, Lukas; Palla, Giovanni; Sturm, Gregor; Gayoso, Adam; Kats, Ilia; Koutrouli, Mikaela; Berger, Bonnie; Pe'er, Dana; Regev, Aviv; Teichmann, Sarah; Finotello, Francesca; Wolf, F. Alexander; Yosef, Nir; Stegle, Oliver; Theis, Fabian; Angerer, Philipp; Bergen, Volker; Boyeau, Pierre D.; Buettner, Maren; Eraslan, Gokcen; Fischer, David; Frank, Max C.; Hong, Justin; Klein, Michal; Lange, Marius; Lopez, Romain; Lotfollahi, Mohammad; Luecken, Malte; Ramirez, Fidel A.; Regier, Jeffrey; Rybakov, Sergei; Schaar, Anna; Valiollah Pour Amiri, Valeh; Weiler, Philipp J.; Xing, Galen Share Save
Best practices for single-cell analysis across modalities Heumos, Lukas; Schaar, Anna C.; Lance, Christopher; Litinetskaya, Anastasia; Drost, Felix; Zappia, Luke; Luecken, Malte; Strobl, Daniel; Henao, Juan; Curion, Fabiola B.; Schiller, Herbert; Theis, Fabian Share Save
Spatial transcriptomics (ST) of cigarette smoke (CS)-induced experimental COPD Chen, H.; Galvao, I.; Donovan, C.; Kim, R.; Ortega, D.; Idrees, S.; Schulte-Schrepping, J.; Schaar, A.; Faiz, A.; Schultze, J.; Hansbro, P. Share Save
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Squidpy: a scalable framework for spatial omics analysis Palla, Giovanni; Spitzer, Hannah; Klein, Michal; Fischer, David; Schaar, Anna Christina; Kuemmerle, Louis Benedikt; Rybakov, Sergei; Ibarra, Ignacio L.; Holmberg, Olle; Virshup, Isaac; Lotfollahi, Mohammad; Richter, Sabrina; Theis, Fabian J. Share Save
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