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Thomas C. Kaufman

Indiana University

81H-index
214Paper Count
2.7WCitation Count
Published Papers 40
Publication Date
Alternative Vertebrate and Invertebrate Model Organisms Show Similar Sensitivity as Rodents to a Diverse Set of Chemicals
err2025-11-24
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errGaëlle Hayot; Gavin R. Lloyd; Gaurav D. Diwan; Nathan Keith; Shannon R. Smoot; Christina A. Cramer von Clausbruch; Thomas C. Kaufman; Marianne Barnard; Andrew J. Tindall; Stephen P. Glaholt; Riccardo Massei; Rubén Martínez; Uwe Strähle; Luisa Orsini; Robert B. Russell; Jason M. Tennessen; Stefan Scholz; Joseph R. Shaw; Jonathan H. Freedman; John K. Colbourne; Carsten Weiss; Thomas Dickmeis
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FlyBase: a guided tour of highlighted features
err2022-03-10
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errGramates, L. Sian; Agapite, Julie; Attrill, Helen; Calvi, Brian R.; Crosby, Madeline A.; dos Santos, Gilberto; Goodman, Joshua L.; Goutte-Gattat, Damien; Jenkins, Victoria K.; Kaufman, Thomas; Larkin, Aoife; Matthews, Beverley B.; Millburn, Gillian; Strelets, Victor B.
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Alliance of Genome Resources Portal: unified model organism research platform
err2019-09-25
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errAgapite, Julie; Albou, Laurent-Philippe; Aleksander, Suzi; Argasinska, Joanna; Arnaboldi, Valerio; Attrill, Helen; Bello, Susan M.; Blake, Judith A.; Blodgett, Olin; Bradford, Yvonne M.; Bult, Carol J.; Cain, Scott; Calvi, Brian R.; Carbon, Seth; Chan, Juancarlos; Chen, Wen J.; Cherry, J. Michael; Cho, Jaehyoung; Christie, Karen R.; Crosby, Madeline A.; De Pons, Jeff; Dolan, Mary E.; dos Santos, Gilberto; Dunn, Barbara Dunn Nathan; Eagle, Anne; Ebert, Dustin; Engel, Stacia R.; Fashena, David; Frazer, Ken; Gao, Sibyl; Gondwe, Felix; Goodman, Josh; Gramates, L. Sian; Grove, Christian A.; Harris, Todd; Harrison, Marie-Claire; Howe, Douglas G.; Howe, Kevin L.; Jha, Sagar; Kadin, James A.; Kaufman, Thomas C.; Kalita, Patrick; Karra, Kalpana; Kishore, Ranjana; Laulederkind, Stan; Lee, Raymond; MacPherson, Kevin A.; Marygold, Steven J.; Matthews, Beverley; Millburn, Gillian; Miyasato, Stuart; Moxon, Sierra; Mueller, Hans-Michael; Mungall, Christopher; Muruganujan, Anushya; Mushayahama, Tremayne; Nash, Robert S.; Ng, Patrick; Paulini, Michael; Perrimon, Norbert; Pich, Christian; Raciti, Daniela; Richardson, Joel E.; Russell, Matthew; Gelbart, Susan Russo; Ruzicka, Leyla; Schaper, Kevin; Shimoyama, Mary; Simison, Matt; Smith, Cynthia; Shaw, David R.; Shrivatsav, Ajay; Skrzypek, Marek; Smith, Jennifer R.; Sternberg, Paul W.; Tabone, Christopher J.; Thomas, Paul D.; Thota, Jyothi; Toro, Sabrina; Tomczuk, Monika; Tutaj, Marek; Tutaj, Monika; Urbano, Jose-Maria; Van Auken, Kimberly; Van Slyke, Ceri E.; Wang, Shur-Jen; Weng, Shuai; Westerfield, Monte; Williams, Gary; Wong, Edith D.; Wright, Adam; Yook, Karen
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FlyBase 2.0: the next generation
err2018-10-26
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errThurmond, Jim; Goodman, Joshua L.; Strelets, Victor B.; Attrill, Helen; Gramates, L. Sian; Marygold, Steven J.; Matthews, Beverley B.; Millburn, Gillian; Antonazzo, Giulia; Trovisco, Vitor; Kaufman, Thomas C.; Calvi, Brian R.; Perrimon, Norbert; Gelbart, Susan Russo; Agapite, Julie; Broll, Kris; Crosby, Lynn; dos Santos, Gilberto; Emmert, David; Falls, Kathleen; Jenkins, Victoria; Sutherland, Carol; Tabone, Christopher; Zhou, Pinglei; Zytkovicz, Mark; Brown, Nick; Garapati, Phani; Holmes, Alex; Larkin, Aoife; Marygold, Steven; Pilgrim, Clare; Urbano, Pepe; Czoch, Bryon; Goodman, Josh; Thurmond, Jim; Cripps, Richard; Baker, Phillip
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Model organism data evolving in support of translational medicine
err2018-09-17
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errHowe, Douglas G.; Blake, Judith A.; Bradford, Yvonne M.; Bult, Carol J.; Calvi, Brian R.; Enge, Stacia R.; Kadin, James A.; Kaufman, Thomas C.; Kishores, Ranjana; Laulederkind, Stanleyj F.; Lewis, Suzanna E.; Moxon, Sierra A. T.; Richardson, Joel E.; Smith, Cynthia
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Effects of Gene Dose, Chromatin, and Network Topology on Expression in Drosophila melanogaster
err2016-09-06
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errLee, Hangnoh; Cho, Dong-Yeon; Whitworth, Cale; Eisman, Robert; Phelps, Melissa; Roote, John; Kaufman, Thomas; Cook, Kevin; Russell, Steven; Przytycka, Teresa; Oliver, Brian
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Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
err2014-07-01
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errWen, Jiayu; Mohammed, Jaaved; Bortolamiol-Becet, Diane; Tsai, Harrison; Robine, Nicolas; Westholm, Jakub O.; Ladewig, Erik; Dai, Qi; Okamura, Katsutomo; Flynt, Alex S.; Zhang, Dayu; Andrews, Justen; Cherbas, Lucy; Kaufman, Thomas C.; Cherbas, Peter; Siepel, Adam; Lai, Eric C.
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Global Patterns of Tissue-Specific Alternative Polyadenylation in Drosophila (vol 1, pg 277, 2012)
err2013-03-01
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errSmibert, Peter; Miura, Pedro; Westholm, Jakub O.; Shenker, Sol; May, Gemma; Duff, Michael O.; Zhang, Dayu; Eads, Brian D.; Carlson, Joe; Brown, James B.; Eisman, Robert C.; Andrews, Justen; Kaufman, Thomas; Cherbas, Peter; Celniker, Susan E.; Graveley, Brenton R.; Lai, Eric C.
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The generation of chromosomal deletions to provide extensive coverage and subdivision of the Drosophila melanogaster genome
err2012-03-22
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errCook, R. Kimberley; Christensen, Stacey J.; Deal, Jennifer A.; Coburn, Rachel A.; Deal, Megan E.; Gresens, Jill M.; Kaufman, Thomas C.; Cook, Kevin R.
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Global Patterns of Tissue-Specific Alternative Polyadenylation in Drosophila
err2012-03-01
err233
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errSmibert, Peter; Miura, Pedro; Westholm, Jakub O.; Shenker, Sol; May, Gemma; Duff, Michael O.; Zhang, Dayu; Eads, Brian D.; Carlson, Joe; Brown, James B.; Eisman, Robert C.; Andrews, Justen; Kaufman, Thomas; Cherbas, Peter; Celniker, Susan E.; Graveley, Brenton R.; Lai, Eric C.
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The transcriptional diversity of 25 Drosophila cell lines
err2010-12-22
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errCherbas, Lucy; Willingham, Aarron; Zhang, Dayu; Yang, Li; Zou, Yi; Eads, Brian D.; Carlson, Joseph W.; Landolin, Jane M.; Kapranov, Philipp; Dumais, Jacqueline; Samsonova, Anastasia; Choi, Jeong-Hyeon; Roberts, Johnny; Davis, Carrie A.; Tang, Haixu; van Baren, Marijke J.; Ghosh, Srinka; Dobin, Alexander; Bell, Kim; Lin, Wei; Langton, Laura; Duff, Michael O.; Tenney, Aaron E.; Zaleski, Chris; Brent, Michael R.; Hoskins, Roger A.; Kaufman, Thomas C.; Andrews, Justen; Graveley, Brenton R.; Perrimon, Norbert; Celniker, Susan E.; Gingeras, Thomas R.; Cherbas, Peter
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Genome-wide analysis of promoter architecture in Drosophila melanogaster
err2010-12-22
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errHoskins, Roger A.; Landolin, Jane M.; Brown, James B.; Sandler, Jeremy E.; Takahashi, Hazuki; Lassmann, Timo; Yu, Charles; Booth, Benjamin W.; Zhang, Dayu; Wan, Kenneth H.; Yang, Li; Boley, Nathan; Andrews, Justen; Kaufman, Thomas C.; Graveley, Brenton R.; Bickel, Peter J.; Carninci, Piero; Carlson, Joseph W.; Celniker, Susan E.
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A Molecularly Defined Duplication Set for the X Chromosome of Drosophila melanogaster
err2010-12-01
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errVenken, Koen J. T.; Popodi, Ellen; Holtzman, Stacy L.; Schulze, Karen L.; Park, Soo; Carlson, Joseph W.; Hoskins, Roger A.; Bellen, Hugo J.; Kaufman, Thomas C.
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A New Resource for Characterizing X-Linked Genes in Drosophila melanogaster: Systematic Coverage and Subdivision of the X Chromosome With Nested, Y-Linked Duplications
err2010-12-01
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errCook, R. Kimberley; Deal, Megan E.; Deal, Jennifer A.; Garton, Russell D.; Brown, C. Adam; Ward, Megan E.; Andrade, Rachel S.; Spana, Eric P.; Kaufman, Thomas C.; Cook, Kevin R.
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Insights into aging through measurements of the Drosophila proteome as a function of temperature
err2010-09-01
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errRobinson, Rena A. S.; Kellie, John F.; Kaufman, Thomas C.; Clemmer, David E.
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