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High-quality chromosome scale genome assemblies of two important Sorghum inbred lines, Tx2783 and RTx436 Wang, Bo; Chougule, Kapeel; Jiao, Yinping; Olson, Andrew; Kumar, Vivek; Gladman, Nicholas; Huang, Jian; Llaca, Victor; Fengler, Kevin; Wei, Xuehong; Wang, Liya; Wang, Xiaofei; Regulski, Michael; Drenkow, Jorg; Gingeras, Thomas; Hayes, Chad; Armstrong, J. Scott; Huang, Yinghua; Xin, Zhanguo; Ware, Doreen Share Save
Long non-coding RNAs: definitions, functions, challenges and recommendations Mattick, John S. S.; Amaral, Paulo P. P.; Carninci, Piero; Carpenter, Susan; Chang, Howard Y. Y.; Chen, Ling-Ling; Chen, Runsheng; Dean, Caroline; Dinger, Marcel E. E.; Fitzgerald, Katherine A. A.; Gingeras, Thomas R. R.; Guttman, Mitchell; Hirose, Tetsuro; Huarte, Maite; Johnson, Rory; Kanduri, Chandrasekhar; Kapranov, Philipp; Lawrence, Jeanne B. B.; Lee, Jeannie T. T.; Mendell, Joshua T. T.; Mercer, Timothy R. R.; Moore, Kathryn J. J.; Nakagawa, Shinichi; Rinn, John L. L.; Spector, David L. L.; Ulitsky, Igor; Wan, Yue; Wilusz, Jeremy E. E.; Wu, Mian Share Save
Selective time-dependent changes in activity and cell-specific gene expression in human postmortem brain Dachet, Fabien; Brown, James B.; Valyi-Nagy, Tibor; Narayan, Kunwar D.; Serafini, Anna; Boley, Nathan; Gingeras, Thomas R.; Celniker, Susan E.; Mohapatra, Gayatry; Loeb, Jeffrey A. Share Save
Single-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery Xu, Xiaosa; Crow, Megan; Rice, Brian R.; Li, Forrest; Harris, Benjamin; Liu, Lei; Demesa-Arevalo, Edgar; Lu, Zefu; Wang, Liya; Fox, Nathan; Wang, Xiaofei; Drenkow, Jorg; Luo, Anding; Char, Si Nian; Yang, Bing; Sylvester, Anne W.; Gingeras, Thomas R.; Schmitz, Robert J.; Ware, Doreen; Lipka, Alexander E.; Gillis, Jesse; Jackson, David Share Save
A limited set of transcriptional programs define major cell types Breschi, Alessandra; Munoz-Aguirre, Manuel; Wucher, Valentin; Davis, Carrie A.; Garrido-Martin, Diego; Djebali, Sarah; Gillis, Jesse; Pervouchine, Dmitri D.; Vlasova, Anna; Dobin, Alexander; Zaleski, Chris; Drenkow, Jorg; Danyko, Cassidy; Scavelli, Alexandra; Reverter, Ferran; Snyder, Michael P.; Gingeras, Thomas R.; Guigo, Roderic Share Save
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Management, Analyses, and Distribution of the MaizeCODE Data on the Cloud Wang, Liya; Lu, Zhenyuan; delaBastide, Melissa; Van Buren, Peter; Wang, Xiaofei; Ghiban, Cornel; Regulski, Michael; Drenkow, Jorg; Xu, Xiaosa; Ortiz-Ramirez, Carlos; Marco, Cristina F.; Goodwin, Sara; Dobin, Alexander; Birnbaum, Kenneth D.; Jackson, David P.; Martienssen, Robert A.; McCombie, William R.; Micklos, David A.; Schatz, Michael C.; Ware, Doreen H.; Gingeras, Thomas R. Share Save
Dynamics of microRNA expression during mouse prenatal development Rahmanian, Sorena; Murad, Rabi; Breschi, Alessandra; Zeng, Weihua; Mackiewicz, Mark; Williams, Brian; Davis, Carrie A.; Roberts, Brian; Meadows, Sarah; Moore, Dianna; Trout, Diane; Zaleski, Chris; Dobin, Alex; Sei, Lei-Hoon; Drenkow, Jorg; Scavelli, Alex; Gingeras, Thomas R.; Wold, Barbara J.; Myers, Richard M.; Guigo, Roderic; Mortazavi, Ali Share Save
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The long noncoding RNA ROCKI regulates inflammatory gene expression Zhang, Qiong; Chao, Ti-Chun; Patil, Veena S.; Qin, Yue; Tiwari, Shashi Kant; Chiou, Joshua; Dobin, Alexander; Tsai, Chih-Ming; Li, Zhonghan; Dang, Jason; Gupta, Shagun; Urdahl, Kevin; Nizet, Victor; Gingeras, Thomas R.; Gaulton, Kyle J.; Rana, Tariq M. Share Save
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Advances, challenges, and opportunities in extracellular RNA biology: insights from the NIH exRNA Strategic Workshop Li, Kang; Rodosthenous, Rodosthenis S.; Kashanchi, Fatah; Gingeras, Thomas; Gould, Stephen J.; Kuo, Lillian S.; Kurre, Peter; Lee, Hakho; Leonard, Joshua N.; Liu, Huiping; Lombo, Tania B.; Momma, Stefan; Nolan, John P.; Ochocinska, Margaret J.; Pegtel, D. Michiel; Sadovsky, Yoel; Sanchez-Madrid, Francisco; Valdes, Kayla M.; Vickers, Kasey C.; Weaver, Alissa M.; Witwer, Kenneth W.; Zeng, Yong; Das, Saumya; Raffai, Robert L.; Howcroft, T. Kevin Share Save
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High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing Lagarde, Julien; Uszczynska-Ratajczak, Barbara; Carbonell, Silvia; Perez-Lluch, Silvia; Abad, Amaya; Davis, Carrie; Gingeras, Thomas R.; Frankish, Adam; Harrow, Jennifer; Guigo, Roderic; Johnson, Rory Share Save
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Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression Pervouchine, Dmitri D.; Djebali, Sarah; Breschi, Alessandra; Davis, Carrie A.; Barja, Pablo Prieto; Dobin, Alex; Tanzer, Andrea; Lagarde, Julien; Zaleski, Chris; See, Lei-Hoon; Fastuca, Meagan; Drenkow, Jorg; Wang, Huaien; Bussotti, Giovanni; Pei, Baikang; Balasubramanian, Suganthi; Monlong, Jean; Harmanci, Arif; Gerstein, Mark; Beer, Michael A.; Notredame, Cedric; Guigo, Roderic; Gingeras, Thomas R. Share Save
Comparison of the transcriptional landscapes between human and mouse tissues Lin, Shin; Lin, Yiing; Nery, Joseph R.; Urich, Mark A.; Breschi, Alessandra; Davis, Carrie A.; Dobin, Alexander; Zaleski, Christopher; Beer, Michael A.; Chapman, William C.; Gingeras, Thomas R.; Ecker, Joseph R.; Snyder, Michael P. Share Save
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