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Piero Carninci

RIKEN

117H-index
655Paper Count
8.8WCitation Count
Published Papers 242
Publication Date
Correction: Widespread 3′UTR capped RNAs derive from G-rich regions in proximity to AGO2 binding sites
err2026-03-30
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errOAAI
errNejc Haberman; Holly Digby; Rupert Faraway; Rebecca Cheung; Anob M. Chakrabarti; Andrew M. Jobbins; Callum Parr; Kayoko Yasuzawa; Takeya Kasukawa; Chi Wai Yip; Masaki Kato; Hazuki Takahashi; Piero Carninci; Santiago Vernia; Jernej Ule; Christopher R. Sibley; Aida Martinez-Sanchez; Boris Lenhard
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Decoding the regulatory grammar of human gene promoters
err2026-03-30
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PREAI
errZarnab Ahmad; Piero Carninci
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CXCR4 induces memory formation over exhaustion in CAR-T cells to achieve durable leukemia targeting
err2026-01-26
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errOAAI
errAri Itoh-Nakadai; Minggao Liang; Michiho Shindo; Chen Bibi; Mariko Tomizawa-Murasawa; Saera Fujiki; Akiko Kaneko; Emi Kanamaru; Mari Hashimoto; Hiroshi Kajita; Yoshinari Ando; Miki Kojima; Jonathan Moody; Makoto Iwasaki; Shinsuke Takagi; Ryo Nakagawa; Saumya Agrawal; Hanae Amitani-Iijima; Kaori Sato; Yuriko Sorimachi; Nahoko Suzuki; Takehiro Fukami; Kazuharu Hanada; Satoshi Morita; Kazushige Katsura; Takehisa Matsumoto; Maiko Kobayashi; Masahiko Kato; Yasuyuki Negishi; Mikako Shirouzu; Yuho Najima; Keiyo Takubo; Chung Chau Hon; Naoyuki Uchida; Shuichi Taniguchi; Yukihide Momozawa; Piero Carninci; Leonard D. Shultz; Yoriko Saito; Michiel de Hoon; Jay W. Shin; Fumihiko Ishikawa
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Long-read sequencing reveals genomic and epigenomic variation in the dark genome of human Alzheimer's disease
err2025-11-14
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errOAAI
errRamirez, Paulino; Sun, Wenyan; Dehkordi, Shiva Kazempour; Zare, Habil; Pascarella, Giovanni; Carninci, Piero; Fongang, Bernard; Bieniek, Kevin F.; Frost, Bess
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Internal ribosome entry sites enhance translation in trans in antisense non-coding SINEUP and circular RNAs
err2025-08-28
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errOAAI
errD'Agostino, Sabrina; Tettey-Matey, Abraham; Volpe, Massimiliano; Pierattini, Bianca; D'Agostino, Mattia; Smela, Denisa; Ansaloni, Federico; Broglia, Laura; Lau, Pierre; Peruzzo, Omar; Braccia, Clarissa; Armirotti, Andrea; Scarpato, Margherita; Damiani, Devid; Ros, Gloria; Di Carlo, Valerio; Maniscalco, Federica; Bechara, Elias; Tartaglia, Gian Gaetano; Carninci, Piero; Santoro, Claudio; Persichetti, Francesca; Pandolfini, Luca; Simonetti, Angelita; Espinoza, Stefano; Zucchelli, Silvia; Sanges, Remo; Bon, Carlotta; Gustincich, Stefano
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Expression of concern for global biomedical research by the human genome organization (HUGO)
err2025-04-26
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errOAAI
errHamosh, Ada; Arzuaga, Fabiana; Avraham, Karen B.; Bin Alwi, Zilfalil; Bowcock, Anne; Burn, Sir John; Carninci, Piero; Dandara, Collet; Lopes-Cendes, Iscia; Mutesa, Leon; Majumder, Partha P.; Reichardt, Juergen K., V; Veltman, Joris A.
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Drosophila Piwi distinguishes transposons from mRNAs by piRNA complementarity and abundance
err2024-12-01
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PREAI
errAriura, Masaru; Solberg, Therese; Ishizu, Hirotsugu; Takahashi, Hazuki; Carninci, Piero; Siomi, Haruhiko; Iwasaki, Yuka W.
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Update of the FANTOM web resource: enhancement for studying noncoding genomes
err2024-11-27
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errOAAI
errNobusada, Tomoe; Yip, Chi Wai; Agrawal, Saumya; Severin, Jessica; Abugessaisa, Imad; Hasegawa, Akira; Hon, Chung Chau; Ide, Satoru; Koido, Masaru; Kondo, Atsushi; Masuya, Hiroshi; Oki, Shinya; Tagami, Michihira; Takada, Toyoyuki; Terao, Chikashi; Thalhath, Nishad; Walker, Scott; Yasuzawa, Kayoko; Shin, Jay W.; de Hoon, Michiel J. L.; Carninci, Piero; Kawaji, Hideya; Kasukawa, Takeya
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RADIP technology comprehensively identifies H3K27me3-associated RNA-chromatin interactions
err2024-11-18
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errOAAI
errShu, Xufeng; Kato, Masaki; Takizawa, Satoshi; Suzuki, Yutaka; Carninci, Piero
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Compared to other NHEJ factors, DNA-PK protein and RNA levels are markedly increased in all higher primates, but not in prosimians or other mammals
err2024-10-01
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PREAI
errPascarella, Giovanni; Conner, Kayla N.; Goff, Noah J.; Carninci, Piero; Olive, Andrew J.; Meek, Katheryn
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The 1% gift to humanity: The Human Genome Project II
err2024-09-11
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errOAAI
errLiu, Weibin; Li, Yan; Patrinos, George P.; Xu, Shuhua; Thong, Meow-Keong; Chen, Zhengming; Crawley, Francis P.; Li, Liming; Ekmekci, Perihan Elif; Drmanac, Radoje; Cheong, Weiyang; Benamouzig, Robert; Nguyen, Quan; Volchkov, Pavel; Reichardt, Juergen K. V.; Carninci, Piero; Majumder, Partha; Jin, Xin; Church, George; Wang, Jian; Xu, Xun
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CapTrap-seq: a platform-agnostic and quantitative approach for high-fidelity full-length RNA sequencing
err2024-06-27
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errOAAI
errCarbonell-Sala, Silvia; Perteghella, Tamara; Lagarde, Julien; Nishiyori, Hiromi; Palumbo, Emilio; Arnan, Carme; Takahashi, Hazuki; Carninci, Piero; Uszczynska-Ratajczak, Barbara; Guigo, Roderic
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Systematic assessment of long-read RNA-seq methods for transcript identification and quantification
err2024-06-07
err15
errOAAI
errPardo-Palacios, Francisco J.; Wang, Dingjie; Reese, Fairlie; Diekhans, Mark; Carbonell-Sala, Silvia; Williams, Brian; Loveland, Jane E.; De Maria, Maite; Adams, Matthew S.; Balderrama-Gutierrez, Gabriela; Behera, Amit K.; Gonzalez Martinez, Jose M.; Hunt, Toby; Lagarde, Julien; Liang, Cindy E.; Li, Haoran; Meade, Marcus Jerryd; Moraga Amador, David A.; Prjibelski, Andrey D.; Birol, Inanc; Bostan, Hamed; Brooks, Ashley M.; Celik, Muhammed Hasan; Chen, Ying; Du, Mei R. M.; Felton, Colette; Goeke, Jonathan; Hafezqorani, Saber; Herwig, Ralf; Kawaji, Hideya; Lee, Joseph; Li, Jian-Liang; Lienhard, Matthias; Mikheenko, Alla; Mulligan, Dennis; Nip, Ka Ming; Pertea, Mihaela; Ritchie, Matthew E.; Sim, Andre D.; Tang, Alison D.; Wan, Yuk Kei; Wang, Changqing; Wong, Brandon Y.; Yang, Chen; Barnes, If; Berry, Andrew E.; Capella-Gutierrez, Salvador; Cousineau, Alyssa; Dhillon, Namrita; Fernandez-Gonzalez, Jose M.; Ferrandez-Peral, Luis; Garcia-Reyero, Natalia; Goetz, Stefan; Hernandez-Ferrer, Carles; Kondratova, Liudmyla; Liu, Tianyuan; Martinez-Martin, Alessandra; Menor, Carlos; Mestre-Tomas, Jorge; Mudge, Jonathan M.; Panayotova, Nedka G.; Paniagua, Alejandro; Repchevsky, Dmitry; Ren, Xingjie; Rouchka, Eric; Saint-John, Brandon; Sapena, Enrique; Sheynkman, Leon; Smith, Melissa Laird; Suner, Marie-Marthe; Takahashi, Hazuki; Youngworth, Ingrid A.; Carninci, Piero; Denslow, Nancy D.; Guigo, Roderic; Hunter, Margaret E.; Maehr, Rene; Shen, Yin; Tilgner, Hagen U.; Wold, Barbara J.; Vollmers, Christopher; Frankish, Adam; Au, Kin Fai; Sheynkman, Gloria M.; Mortazavi, Ali; Conesa, Ana; Brooks, Angela N.
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Decryption of sequence, structure, and functional features of SINE repeat elements in SINEUP non-coding RNA-mediated post-transcriptional gene regulation
err2024-02-21
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errOAAI
errSharma, Harshita; Valentine, Matthew N. Z.; Toki, Naoko; Sueki, Hiromi Nishiyori; Gustincich, Stefano; Takahashi, Hazuki; Carninci, Piero
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ZENBU-Reports: a graphical web-portal builder for interactive visualization and dissemination of genome-scale data
err2023-08-21
err4
errOAAI
errSeverin, Jessica; Agrawal, Saumya; Ramilowski, Jordan A.; Deviatiiarov, Ruslan; Shin, Jay W.; Carninci, Piero; de Hoon, Michiel
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SINEUP non-coding RNA activity depends on specific N6-methyladenosine nucleotides
err2023-06-01
err4
errOAAI
errPierattini, Bianca; D 'Agostino, Sabrina; Bon, Carlotta; Peruzzo, Omar; Alendar, Andrej; Codino, Azzurra; Ros, Gloria; Persichetti, Francesca; Sanges, Remo; Carninci, Piero; Santoro, Claudio; Espinoza, Stefano; Pandol, Luca; Valentini, Paola; Gustincich, Stefano
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Long non-coding RNAs: definitions, functions, challenges and recommendations
err2023-01-03
err711
errOAAI
errMattick, John S. S.; Amaral, Paulo P. P.; Carninci, Piero; Carpenter, Susan; Chang, Howard Y. Y.; Chen, Ling-Ling; Chen, Runsheng; Dean, Caroline; Dinger, Marcel E. E.; Fitzgerald, Katherine A. A.; Gingeras, Thomas R. R.; Guttman, Mitchell; Hirose, Tetsuro; Huarte, Maite; Johnson, Rory; Kanduri, Chandrasekhar; Kapranov, Philipp; Lawrence, Jeanne B. B.; Lee, Jeannie T. T.; Mendell, Joshua T. T.; Mercer, Timothy R. R.; Moore, Kathryn J. J.; Nakagawa, Shinichi; Rinn, John L. L.; Spector, David L. L.; Ulitsky, Igor; Wan, Yue; Wilusz, Jeremy E. E.; Wu, Mian
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Piwil2 (Mili) sustains neurogenesis and prevents cellular senescence in the postnatal hippocampus
err2022-12-06
err10
errOAAI
errGasperini, Caterina; Tuntevski, Kiril; Beatini, Silvia; Pelizzoli, Roberta; Van, Amanda Lo; Mangoni, Damiano; Cossu, Rosa M.; Pascarella, Giovanni; Bianchini, Paolo; Bielefeld, Pascal; Scarpato, Margherita; Pons-Espinal, Meritxell; Sanges, Remo; Diaspro, Alberto; Fitzsimons, Carlos P.; Carninci, Piero; Gustincich, Stefano; De Pietri Tonelli, Davide
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Antisense-oligonucleotide-mediated perturbation of long non-coding RNA reveals functional features in stem cells and across cell types
err2022-12-01
err11
errOAAI
errYip, Chi Wai; Hon, Chung-Chau; Yasuzawa, Kayoko; Sivaraman, Divya M.; Ramilowski, Jordan A.; Shibayama, Youtaro; Agrawal, Saumya; Prabhu, Anika V.; Parr, Callum; Severin, Jessica; Lan, Yan Jun; Dostie, Josee; Petri, Andreas; Nishiyori-Sueki, Hiromi; Tagami, Michihira; Itoh, Masayoshi; Lopez-Redondo, Fernando; Kouno, Tsukasa; Chang, Jen-Chien; Luginbuhl, Joachim; Kato, Masaki; Murata, Mitsuyoshi; Yip, Wing Hin; Shu, Xufeng; Abugessaisa, Imad; Hasegawa, Akira; Suzuki, Harukazu; Kauppinen, Sakari; Yagi, Ken; Okazaki, Yasushi; Kasukawa, Takeya; de Hoon, Michiel; Carninci, Piero; Shin, Jay W.
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