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The primary sclerosing cholangitis and ulcerative colitis colonic mucosa defined through paired microbial and single-cell RNA sequencing Tearle, J.; Zhang, F.; Jackson, K.; Malhotra, P.; Tavakoli, P.; Koentgen, S.; Warren, J.; Williams, C.; Haque, A.; Arzivian, A.; Tedla, N.; Kim, A.; King, H.; Hold, G.; Ghaly, S.; James, K. Share Save
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An Integrated Taxonomy for Monogenic Inflammatory Bowel Disease Bolton, Chrissy; Smillie, Christopher S.; Pandey, Sumeet; Elmentaite, Rasa; Wei, Gabrielle; Argmann, Carmen; Aschenbrenner, Dominik; James, Kylie R.; McGovern, Dermot P. B.; Macchi, Marina; Cho, Judy; Shouval, Dror S.; Kammermeier, Jochen; Koletzko, Sibylle; Bagalopal, Krithika; Capitani, Melania; Cavounidis, Athena; Pires, Elisabete; Weidinger, Carl; McCullagh, James; Arkwright, Peter D.; Haller, Wolfram; Siegmund, Britta; Peters, Lauren; Jostins, Luke; Travis, Simon P. L.; Anderson, Carl A.; Snapper, Scott; Klein, Christoph; Schadt, Eric; Zilbauer, Matthias; Xavier, Ramnik; Teichmann, Sarah; Muise, Aleixo M.; Regev, Aviv; Uhlig, Holm H. Share Save
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Single-Cell Sequencing of Developing Human Gut Reveals Transcriptional Links to Childhood Crohn's Disease Elmentaite, Rasa; Ross, Alexander D. B.; Roberts, Kenny; James, Kylie R.; Ortmann, Daniel; Gomes, Tomas; Nayak, Komal; Tuck, Liz; Pritchard, Sophie; Bayraktar, Omer Ali; Heuschkel, Robert; Vallier, Ludovic; Teichmann, Sarah A.; Zilbauer, Matthias Share Save
Transcriptome dynamics of CD4+ T cells during malaria maps gradual transit from effector to memory Soon, Megan S. F.; Lee, Hyun Jae; Engel, Jessica A.; Straube, Jasmin; Thomas, Bryce S.; Pernold, Clara P. S.; Clarke, Lachlan S.; Laohamonthonkul, Pawat; Haldar, Rohit N.; Williams, Cameron G.; Lansink, Lianne I. M.; Moreira, Marcela L.; Bramhall, Michael; Koufariotis, Lambros T.; Wood, Scott; Chen, Xi; James, Kylie R.; Lonnberg, Tapio; Lane, Steven W.; Belz, Gabrielle T.; Engwerda, Christian R.; Khoury, David S.; Davenport, Miles P.; Svensson, Valentine; Teichmann, Sarah A.; Haque, Ashraful Share Save
Malat1 Suppresses Immunity to Infection through Promoting Expression of Maf and IL-10 in Th Cells Hewitson, James P.; West, Katie A.; James, Kylie R.; Rani, Gulab Fatima; Dey, Nidhi; Romano, Audrey; Brown, Najmeeyah; Teichmann, Sarah A.; Kaye, Paul M.; Lagos, Dimitris Share Save
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Distinct microbial and immune niches of the human colon James, Kylie R.; Gomes, Tomas; Elmentaite, Rasa; Kumar, Nitin; Gulliver, Emily L.; King, Hamish W.; Stares, Mark D.; Bareham, Bethany R.; Ferdinand, John R.; Petrova, Velislava N.; Polanski, Krzysztof; Forster, Samuel C.; Jarvis, Lorna B.; Suchanek, Ondrej; Howlett, Sarah; James, Louisa K.; Jones, Joanne L.; Meyer, Kerstin B.; Clatworthy, Menna R.; Saeb-Parsy, Kourosh; Lawley, Trevor D.; Teichmann, Sarah A. Share Save
Plasmodium-specific antibodies block in vivo parasite growth without clearing infected red blood cells Akter, Jasmin; Khoury, David S.; Aogo, Rosemary; Lansink, Lianne I. M.; SheelaNair, Arya; Thomas, Bryce S.; Laohamonthonkul, Pawat; Pernold, Clara P. S.; Dixon, Matthew W. A.; Soon, Megan S. F.; Fogg, Lily G.; Engel, Jessica A.; Elliott, Trish; Sebina, Ismail; James, Kylie R.; Cromer, Deborah; Davenport, Miles P.; Haque, Ashraful Share Save
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IFN Regulatory Factor 3 Balances Th1 and T Follicular Helper Immunity during Nonlethal Blood-Stage Plasmodium Infection James, Kylie R.; Soon, Megan S. F.; Sebina, Ismail; Fernandez-Ruiz, Daniel; Davey, Gayle; Liligeto, Urijah N.; Nair, Arya Sheela; Fogg, Lily G.; Edwards, Chelsea L.; Best, Shannon E.; Lansink, Lianne I. M.; Schroder, Kate; Wilson, Jane A. C.; Austin, Rebecca; Suhrbier, Andreas; Lane, Steven W.; Hill, Geoffrey R.; Engwerda, Christian R.; Heath, William R.; Haque, Ashraful Share Save
Development of a Novel CD4+ TCR Transgenic Line That Reveals a Dominant Role for CD8+ Dendritic Cells and CD40 Signaling in the Generation of Helper and CTL Responses to Blood-Stage Malaria Fernandez-Ruiz, Daniel; Lau, Lei Shong; Ghazanfari, Nazanin; Jones, Claerwen M.; Ng, Wei Yi; Davey, Gayle M.; Berthold, Dorothee; Holz, Lauren; Kato, Yu; Enders, Matthias H.; Bayarsaikhan, Ganchimeg; Hendriks, Sanne H.; Lansink, Lianne I. M.; Engel, Jessica A.; Soon, Megan S. F.; James, Kylie R.; Cozijnsen, Anton; Mollard, Vanessa; Uboldi, Alessandro D.; Tonkin, Christopher J.; de Koning-Ward, Tania F.; Gilson, Paul R.; Kaisho, Tsuneyasu; Haque, Ashraful; Crabb, Brendan S.; Carbone, Francis R.; McFadden, Geoffrey I.; Heath, William R. Share Save
Characterising the effect of antimalarial drugs on the maturation and clearance of murine blood-stage Plasmodium parasites in vivo Khoury, David S.; Cromer, Deborah; Elliott, Trish; Soon, Megan S. F.; Thomas, Bryce S.; James, Kylie R.; Best, Shannon E.; Aogo, Rosemary A.; Engel, Jessica A.; Gartlan, Kate H.; Akter, Jasmin; Sebina, Ismail; Haque, Ashraful; Davenport, Miles P. Share Save
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